Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2186 113 4e-20 seq673 98.7 9e-16 >seq2186 Length=3828881 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||||||||| || |||||||| || | ||| || || | Sbjct 2467685 CCACCCCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 2467744 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || ||||||| | || |||||||| || ||| Sbjct 2467745 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGA 2467804 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || |||||||| | | |||||| | | || || Sbjct 2467805 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2467864 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 2467865 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2467911 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || |||| |||| |||||||||| || |||||||| || | ||| | Sbjct 2468047 TTTGCATGCCACCCCTCAGGCGCAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGT 2468106 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| ||| |||||| | || || ||||||| | || ||||| | Sbjct 2468107 AGTCAGACAGGGTGCGCCCATCTTCCAGCGGCTTGCCAGCAAAGATCAGCCTCTGCTGCT 2468166 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| || || ||||| | || || |||||||| | | |||||| | Sbjct 2468167 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGG 2468226 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || || || ||||| ||||||||||| Sbjct 2468227 GCTCAACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2468281 >seq673 Length=3179169 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| |||||| | || ||||| || || ||||||||||| ||| Sbjct 2476542 TCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTG 2476601 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | |||||| | | || || |||| || ||| Sbjct 2476602 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATG 2476661 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||| |||||||||||||||||| Sbjct 2476662 GTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATGC 2476698 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| |||||| | || ||||| || || ||||||||||| ||| Sbjct 2476770 TCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTG 2476829 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | |||||| | | || || |||| || ||| Sbjct 2476830 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATG 2476889 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||| |||||||||||||||||| Sbjct 2476890 GTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATGC 2476926 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| |||||| | || ||||| || || ||||||||||| ||| Sbjct 2476998 TCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTG 2477057 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | |||||| | | || || |||| || ||| Sbjct 2477058 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATG 2477117 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||| |||||||||||||||||| Sbjct 2477118 GTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATGC 2477154 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| |||||| | || ||||| || || ||||||||||| ||| Sbjct 2477226 TCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTG 2477285 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | |||||| | | || || |||| || ||| Sbjct 2477286 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATG 2477345 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||| |||||||||||||||||| Sbjct 2477346 GTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATGC 2477382 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| |||||| | || ||||| || || ||||||||||| ||| Sbjct 2477454 TCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTG 2477513 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | |||||| | | || || |||| || ||| Sbjct 2477514 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATG 2477573 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || || |||||||||||||||||| Sbjct 2477574 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2477609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448225127480760