Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq673 95.1 8e-15 >seq673 Length=3179169 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | ||| || | | |||||| ||||| ||||| |||||| Sbjct 2477382 CCACCCCTCAGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 2477441 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || |||||||| | || | || || || | ||| Sbjct 2477442 AGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGA 2477501 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||||||||||| | || || | ||||| Sbjct 2477502 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACC 2477561 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || || || |||| ||| ||||| || ||||||||||| Sbjct 2477562 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2477611 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | ||| || | | |||||| ||||| ||||| |||||| Sbjct 2476470 CCACCCCTCAGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 2476529 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || |||||||| | || | || || || | ||| Sbjct 2476530 AGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGA 2476589 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||||||||||| | || || | ||||| Sbjct 2476590 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACC 2476649 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || || || |||| || |||| || ||||||||| Sbjct 2476650 TCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATG 2476697 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | ||| || | | |||||| ||||| ||||| |||||| Sbjct 2476698 CCACCCCTCAGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 2476757 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || |||||||| | || | || || || | ||| Sbjct 2476758 AGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGA 2476817 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||||||||||| | || || | ||||| Sbjct 2476818 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACC 2476877 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || || || |||| || |||| || ||||||||| Sbjct 2476878 TCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATG 2476925 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | ||| || | | |||||| ||||| ||||| |||||| Sbjct 2476926 CCACCCCTCAGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 2476985 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || |||||||| | || | || || || | ||| Sbjct 2476986 AGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGA 2477045 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||||||||||| | || || | ||||| Sbjct 2477046 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACC 2477105 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || || || |||| || |||| || ||||||||| Sbjct 2477106 TCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATG 2477153 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| |||| ||| | ||| || | | |||||| ||||| ||||| |||||| Sbjct 2477154 CCACCCCTCAGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 2477213 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || |||||||| | || | || || || | ||| Sbjct 2477214 AGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGA 2477273 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||||||||||| | || || | ||||| Sbjct 2477274 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACC 2477333 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || || || |||| || |||| || ||||||||| Sbjct 2477334 TCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATG 2477381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334899067145321