Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1389 120 4e-22 seq1587 111 2e-19 seq737 102 1e-16 >seq1389 Length=9232658 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 5780933 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5780992 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 5780993 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5781052 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 5781053 CAACCACTCTCTCACC 5781068 >seq1587 Length=5570568 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 1717226 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1717167 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 1717166 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCTGCAAAAG 1717107 Query 32803 C 32803 | Sbjct 1717106 C 1717106 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 32913 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 32972 || ||| |||||||| || || ||||| | |||||| |||||||||||||| || ||| Sbjct 1715190 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCCGAATGTATATTT 1715131 Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || || || || || || || ||||| || | |||||| || || | ||||||| Sbjct 1715130 TCCATAGCAATCTGGAAGCCATAGAAACAACGAGCCTCTGTGATTTTTACTTCT 1715077 >seq737 Length=313774 Score = 102 bits (112), Expect = 1e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||| ||||||||||||||||||||||| || || | || || ||||||| || || Sbjct 290599 ACTCGCTTCATAAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 290658 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || ||||| || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 290659 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 290717 Query 63190 TTCCAAGTATATGGC 63204 |||| ||| ||||| Sbjct 290718 CTCCAGGTAGATGGC 290732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 282928 TCCACCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 282987 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || || ||||||||||| ||||| |||||||| ||||| || | | || | Sbjct 282988 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 283047 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 283048 TCTGGGAGATCTCCCACACTGTCTTATAGAGCTGCTTCAAGTCGTCAGGAA 283098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633538610563600