Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq673 95.1 1e-14 >seq673 Length=3179169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| | |||| |||| || || |||| || | || || ||| | | Sbjct 2476696 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476637 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| |||||||| Sbjct 2476636 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476577 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | | ||||||||||| || | ||||| | ||| | || || ||||| Sbjct 2476576 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476517 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||| | || ||| | ||||| Sbjct 2476516 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCT 2476485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| | |||| |||| || || |||| || | || || ||| | | Sbjct 2476924 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476865 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| |||||||| Sbjct 2476864 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476805 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | | ||||||||||| || | ||||| | ||| | || || ||||| Sbjct 2476804 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476745 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||| | || ||| | ||||| Sbjct 2476744 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCT 2476713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| | |||| |||| || || |||| || | || || ||| | | Sbjct 2477152 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477093 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| |||||||| Sbjct 2477092 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477033 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | | ||||||||||| || | ||||| | ||| | || || ||||| Sbjct 2477032 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476973 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||| | || ||| | ||||| Sbjct 2476972 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCT 2476941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| | |||| |||| || || |||| || | || || ||| | | Sbjct 2477380 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477321 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| |||||||| Sbjct 2477320 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477261 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | | ||||||||||| || | ||||| | ||| | || || ||||| Sbjct 2477260 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2477201 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||| | || ||| | ||||| Sbjct 2477200 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCT 2477169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| || | || || ||| | | Sbjct 2477608 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477549 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| |||||||| Sbjct 2477548 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477489 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | | ||||||||||| || | ||||| | ||| | || || ||||| Sbjct 2477488 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2477429 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||| | || ||| | ||||| Sbjct 2477428 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCT 2477397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433265729547665