Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1210 150 3e-31 seq462 114 2e-20 >seq1210 Length=2251642 Score = 150 bits (166), Expect = 3e-31 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 1110654 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1110713 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || ||||| | || || |||||||| || ||||||||| | |||| Sbjct 1110714 TATTGATTATTTCAAAGCCTACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 1110773 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || ||||| || || | ||| | || Sbjct 1110774 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 1110833 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || ||||| |||| | ||| | ||| || || | Sbjct 1110834 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 1110893 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 1110894 TAGCATCAATGTCTCCATAAAGTTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 1110949 Score = 132 bits (146), Expect = 7e-26 Identities = 173/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 9735 AGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCA 9794 ||| ||||| |||| |||||| ||| |||| ||||| || || ||||| || | || || Sbjct 1112750 AGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGGATGTCACA 1112809 Query 9795 GACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACC 9854 ||| | ||||||||| ||||||||||| || || |||||||| ||||| || || ||||| Sbjct 1112810 GACGCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAACCTGGGACCAAACC 1112869 Query 9855 AAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCA- 9913 |||||| || | ||| || | ||| ||| | || || | | || | || | || Sbjct 1112870 AAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGGTAGATCAT 1112929 Query 9914 -TATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | ||| | | ||| |||| || || || ||||||||||| || ||||| | ||| Sbjct 1112930 CTCTGCGGCAGTGTC-CTTT-ACTGTCGGTGGATACATTTCTCCATCAATCATCTG 1112983 Score = 107 bits (118), Expect = 3e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | |||| ||| | ||| Sbjct 1111485 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAAGTG 1111544 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 1111545 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 1111604 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 1111605 TACTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 1111662 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 |||| | || || ||||| | ||| | || || ||||| || || || Sbjct 1111663 CGCTCAAGTGTTGCACATAGTCCTCGATAACGATCTTGATGGTCTCTCCTGT 1111714 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| |||| ||||| ||||| | || |||| ||||| || || ||| | Sbjct 1115473 CTTACGTGTCGTACAGTTTTCCCCATAATAGCCTGTCCTTGTACAGTCACATTCATACTG 1115532 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||||||||| |||| ||||| ||||||| || ||||||||||| Sbjct 1115533 ATCAAATCCTGTTGTCATGCATACTCCTCTGTTCTGACACGGGTTTGAGCAGCAAGGGTT 1115592 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 1115593 GGCTGGAAT 1115601 >seq462 Length=1760785 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| ||||| ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 964028 CCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 964087 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||||||||| || | ||| | ||||| || || || || || ||| | Sbjct 964088 TTCAGGGAAAACGGAGCTCCTATCTCCACCATGCTTTCTCCAAAAATACCATTGGGCTGA 964147 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| || | || | ||| |||| ||| ||||| || || Sbjct 964148 GGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCGATGTCTCCATATAGCTCT 964207 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 964208 TCCAGCTCTGCCGCCGTCTCTTCCTCTCCTGCA 964240 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT---ATG 9543 || || |||||| ||||||| | ||| || || || | |||| | || ||| ||| Sbjct 965746 ATCAGCATGGAAGTGTTGTAGAGGAACTGCTCATAGCTGTACT---CTTCCCCTTGGATG 965802 Query 9544 CGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATT 9603 || ||||||| ||| ||||||| | ||||| |||||||| |||| || Sbjct 965803 ATGAAGGAGTCAGGCATCAGCCCATGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATG 965862 Query 9604 CGGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663 || ||| ||||||| || || || ||||| | ||| |||||||| | || || | Sbjct 965863 CGATTCCGGTACTGGAACTGCGTCCCAAACAGCAGCTCAGGGTCAAACTTGAGGCTGAGG 965922 Query 9664 TGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| |||||||| || | | || | || |||||||| ||||| Sbjct 965923 AAGTACCCGCTGAGATGCTGGACGTAGTCTTCAATGACGATCTTAATGGTCTCCCC 965978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723621331539400