Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2186 123 6e-23 seq673 100 7e-16 >seq2186 Length=3828881 Score = 123 bits (136), Expect = 6e-23 Identities = 159/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| || || || ||||| |||| ||||||||||| || || | ||||| Sbjct 2467699 CAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 2467758 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| ||||| ||| ||||| || Sbjct 2467759 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTC 2467818 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 2467819 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 2467878 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| || || ||||| || || || |||||| Sbjct 2467879 CTTGCCCGTCAGGGTCTTCACGAAGATCTG---CATTTT 2467914 Score = 109 bits (120), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| || || || ||||| |||| ||||||||||| || || | ||||| Sbjct 2468069 CAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 2468128 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||| |||| || || ||||| || | |||||| || || ||| || || || Sbjct 2468129 TTCCAGCGGCTTGCCAGCAAAGATCAGCCTCTGCTGCTCTGGGGGAATGCCCTCCTTGTC 2468188 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 2468189 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 2468248 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| || || ||||| || || || |||||| Sbjct 2468249 CTTGCCCGTCAGGGTCTTCACGAAGATCTG---CATTTT 2468284 >seq673 Length=3179169 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || ||||| | |||||||| || | ||||||||||| || | | || || Sbjct 2476484 CAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTC 2476543 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| |||| || | ||||||||| || ||| ||||| || Sbjct 2476544 TTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTC 2476603 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | || || || | || || || Sbjct 2476604 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGT 2476663 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| ||||||| || || Sbjct 2476664 CTTGCCAGTCAGAGTCGTCACAAAGATCTG 2476693 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || ||||| | |||||||| || | ||||||||||| || | | || || Sbjct 2476712 CAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTC 2476771 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| |||| || | ||||||||| || ||| ||||| || Sbjct 2476772 TTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTC 2476831 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | || || || | || || || Sbjct 2476832 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGT 2476891 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| ||||||| || || Sbjct 2476892 CTTGCCAGTCAGAGTCGTCACAAAGATCTG 2476921 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || ||||| | |||||||| || | ||||||||||| || | | || || Sbjct 2476940 CAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTC 2476999 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| |||| || | ||||||||| || ||| ||||| || Sbjct 2477000 TTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTC 2477059 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | || || || | || || || Sbjct 2477060 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGT 2477119 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| ||||||| || || Sbjct 2477120 CTTGCCAGTCAGAGTCGTCACAAAGATCTG 2477149 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || ||||| | |||||||| || | ||||||||||| || | | || || Sbjct 2477168 CAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTC 2477227 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| |||| || | ||||||||| || ||| ||||| || Sbjct 2477228 TTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTC 2477287 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | || || || | || || || Sbjct 2477288 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGT 2477347 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| ||||||| || || Sbjct 2477348 CTTGCCAGTCAGAGTCGTCACAAAGATCTG 2477377 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || ||||| | |||||||| || | ||||||||||| || | | || || Sbjct 2477396 CAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTC 2477455 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| |||| || | ||||||||| || ||| ||||| || Sbjct 2477456 TTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTC 2477515 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| | || || || | || || || Sbjct 2477516 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGT 2477575 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 2477576 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 2477605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178743497734997