Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2186 149 6e-31 seq673 105 7e-18 seq1389 84.2 2e-11 >seq2186 Length=3828881 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || |||||||| ||||||||| | || || ||| | Sbjct 2468285 AAAAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCC 2468226 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| ||||| |||||| | || Sbjct 2468225 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 2468166 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || ||||| | |||||| || | ||||||||| ||||| Sbjct 2468165 GCAGCAGAGGCTGATCTTTGCTGGCAAGCCGCTGGAAGATGGGCGCACCCTGTCTGACTA 2468106 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| |||||| | || ||||| ||||| ||||| |||| || ||| Sbjct 2468105 CAACATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGCCTGAGGGGTGGC 2468054 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || |||||||| ||||||||| | || || ||| | Sbjct 2467915 AAAAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCC 2467856 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| || || |||||| | || Sbjct 2467855 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGA 2467796 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || ||||| |||||||| || | ||||||||| ||||| Sbjct 2467795 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 2467736 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| |||||| | || ||||| ||||| ||||| |||| || || Sbjct 2467735 CAACATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGCCTGAGGGGTGG 2467685 >seq673 Length=3179169 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||| ||| | || || ||| || Sbjct 2477611 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCC 2477552 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | | | || | || |||| ||||| || || |||||| | ||| Sbjct 2477551 CGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGAC 2477492 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| | | || ||||| |||||||| |||| |||| |||| |||||| Sbjct 2477491 CAGCAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTAC 2477432 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||||| | | || ||| | |||||||| |||| || ||| Sbjct 2477431 AACATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2477381 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || | || || || ||||| ||||| ||| | || || ||| || Sbjct 2476696 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476637 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2476636 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476577 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| | | || ||||| |||||||| |||| |||| |||| ||||||||| Sbjct 2476576 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476517 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| | | || ||| | |||||||| |||| || ||| Sbjct 2476516 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476469 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || | || || || ||||| ||||| ||| | || || ||| || Sbjct 2476924 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476865 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2476864 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476805 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| | | || ||||| |||||||| |||| |||| |||| ||||||||| Sbjct 2476804 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476745 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| | | || ||| | |||||||| |||| || ||| Sbjct 2476744 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476697 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || | || || || ||||| ||||| ||| | || || ||| || Sbjct 2477152 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477093 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2477092 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477033 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| | | || ||||| |||||||| |||| |||| |||| ||||||||| Sbjct 2477032 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476973 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| | | || ||| | |||||||| |||| || ||| Sbjct 2476972 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476925 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || | || || || ||||| ||||| ||| | || || ||| || Sbjct 2477380 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477321 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2477320 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477261 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| | | || ||||| |||||||| |||| |||| |||| ||||||||| Sbjct 2477260 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2477201 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| | | || ||| | |||||||| |||| || ||| Sbjct 2477200 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2477153 >seq1389 Length=9232658 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 5780933 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5780992 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 5780993 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5781052 Query 133037 CCACCA 133042 | |||| Sbjct 5781053 CAACCA 5781058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500099080781440