Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2398 95.1 9e-14 seq340 87.8 1e-11 seq1974 86.0 5e-11 >seq2398 Length=1710257 Score = 95.1 bits (104), Expect = 9e-14 Identities = 317/487 (65%), Gaps = 6/487 (1%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | || || || |||||||||||||| | ||||| ||||| || || ||||||| Sbjct 1247535 CGGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGAGGGA 1247594 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || ||||| || | | |||| | ||||| || || || | Sbjct 1247595 CTCCACGGGGCGCCGGGGGGATGCCCGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 1247654 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGA-TAGTA-ACTACAGTTTGATTATCTGA 517434 | || | | ||||||||| | | |||| || | ||| | | || || ||||| Sbjct 1247655 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGA 1247712 Query 517435 ATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 517493 || || || || |||| | || ||| ||||| || ||||| | | || | | Sbjct 1247713 GTAGGTGGTGAA-GGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAG 1247771 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 |||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 1247772 CGGTCATCACGCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 1247831 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | || || | || ||| | | || | || || || ||||| | ||||||| Sbjct 1247832 GCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATGGCCGCTTGCACGGCAGCAC 1247891 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 | || |||||||| ||||| || || | | | || || | ||| |||||||| || | Sbjct 1247892 CGTAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTCAGCTCTTTGCCATTGAAGAAGT 1247951 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 || |||| | | |||||| ||||| | || || || || | || || || | Sbjct 1247952 CCTGTAGCAGTTTTTGGATCTTAGGGATACGGGTAGAGCCACCCACCAGCACGATCTCCT 1248011 Query 517734 GCACCTG 517740 | | ||| Sbjct 1248012 GGATCTG 1248018 >seq340 Length=85729 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || || | ||||| || ||||| || |||||| | ||| | | | ||||| Sbjct 77457 TGTTGTGGCTACGGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 77398 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 77397 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCTGGTCG 77338 Query 367113 TGATGG 367118 ||||| Sbjct 77337 CGATGG 77332 >seq1974 Length=2663464 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| || ||| |||| | || || ||||| || |||| Sbjct 1500754 CAAAAACTGTATTGGTTGGATTCATCGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 1500813 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | || || || || || || ||||| || ||||| |||| Sbjct 1500814 TCTCTGTATCTGTGAAGGCGACGTAGCTGGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 1500873 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || || | || |||| || ||||| | | || || || | ||||| Sbjct 1500874 TGATTTCCACCTTCCCGTGCTGGAATACCCCAACACAGGAATAGGTGGTGCCCAGATCAA 1500933 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 1500934 TCCCGACAGC 1500943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780237291740446