Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2398 320 2e-82 seq1974 192 7e-44 >seq2398 Length=1710257 Score = 320 bits (354), Expect = 2e-82 Identities = 1047/1604 (65%), Gaps = 46/1604 (3%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| |||||||| ||||| | Sbjct 1247416 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATGCGGTCAATGTCATCTTT-GC 1247474 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||||||| | ||| || Sbjct 1247475 TAAGGCGGCCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 1247534 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | ||||| || |||| |||||||| ||||| | || || | || | || || || Sbjct 1247535 CGGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGAGGG- 1247593 Query 6747 TACCCCTCGGTGCGGCTGGA--ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 || || ||| ||| | || || ||||||| |||||| | || || || |||| || Sbjct 1247594 -ACTCCACGGGGCGCCGGGGGGATGCCCGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTC 1247652 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCT 6862 | ||| | | | ||||| || || || | | | ||| || || || ||| Sbjct 1247653 CTTCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGCTC--TGGTTGTCT 1247710 Query 6863 TGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACC 6922 || | |||| | || || || | ||||| || || || | | || | Sbjct 1247711 GAGTAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGA 1247770 Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 | |||||| | ||||| || |||| || || |||||||| || || ||||| || Sbjct 1247771 GCGGTCATCACGCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGC 1247830 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | ||| || || ||| || | || ||| | | |||||| ||||| || | || Sbjct 1247831 AGCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATGGCCGCTTGCACGGCAGCA 1247890 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| || || |||||||||||||| || | || ||||| ||||| || || || | Sbjct 1247891 CCGTAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTCAGCTCTTTGCCATTGAAGAAG 1247950 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 ||| || || || ||| || || ||||| || || || ||||| |||| ||||| || Sbjct 1247951 TCCTGTAGCAGTTTTTGGATCTTAGGGATACGGGTAGAGCCACCCACCAGCACGATCTCC 1248010 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | | | || || | ||| | || || || | ||||| || || |||| Sbjct 1248011 TGGATCTGGCCCTTGTCAAGCTTGGCATCACGCAGCGCCTTTTCCACTGGCTCCAGGGTG 1248070 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 |||||| | ||| | || |||||||| || ||||| |||||||| || ||||| Sbjct 1248071 CCACGGAAGAGGTCAGCATTGAGCTCCTCAAAGCGGGCACGTGTAATGGAGGTGTAGAAG 1248130 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAAC 7339 || | ||| ||||| | || || || || ||| | | |||| || ||||| | Sbjct 1248131 TCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTAGCTTGT---GTGGAAGAGCTGAGA 1248187 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || | |||||| ||||| || | || | | || ||| ||| || | | Sbjct 1248188 GTGCGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACCGCTCGCTTGTTGCCAGCA 1248247 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCGAA 7456 || || ||| || ||||| || || |||| || | || || | | | | | Sbjct 1248248 ATGTCGCGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT---G 1248304 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || ||||||| || || || || || || | || || |||||||| || Sbjct 1248305 TCAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCA 1248364 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || |||||||| || || || |||| |||||| ||||| || Sbjct 1248365 TCCTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACA 1248424 Query 7577 TTCGTATC----GTCGTCTT--TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 ||| | || | | | | ||||| || | || || || ||||| || || || Sbjct 1248425 TTCTTCTCTCCAGCCCGCGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTG 1248484 Query 7631 GGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 || ||||| |||||||| | ||| || ||||||| || || | || ||||| || || Sbjct 1248485 GGCTCATTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCGTCTTTGGTGGC 1248543 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 || || || || || || ||||| || || || || | ||| || | | || || Sbjct 1248544 CTGGCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGCACCTTGCG 1248603 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || ||||| | || || || || ||||| |||||||| ||||| || ||||| || Sbjct 1248604 CCCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTC 1248663 Query 7810 AGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG 7868 | | | | || ||| | ||||| || | || |||| | | |||| || || Sbjct 1248664 TG-GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGTACCTTGGGCTT----GC-- 1248716 Query 7869 CACCGGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCG 7925 |||| | ||| | | | ||| | ||||| || || ||| |||| Sbjct 1248717 CACCCTCATTCACCACACGGAAGGGCCAGTGCTTCATGTCAGACTGCACCGTGGGGTCAT 1248776 Query 7926 AAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTG 7985 | |||| | ||||| |||||||| |||||||| | ||||| | |||||||| || Sbjct 1248777 CATACTTGCGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCA 1248836 Query 7986 TTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACG 8045 |||||||| || || || ||||| || || || || || || || || ||||| | Sbjct 1248837 CCTGGTTCTTGGCAGCATCGCCGATGAGGCGCTCTGTA---TCAGTGAAGGCCACGTA-G 1248892 Query 8046 ATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAG 8104 |||| || || || || || ||||| || || || || || || | | | || || Sbjct 1248893 CTGGGTGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACCTTGCCATGCTGGAAG 1248952 Query 8105 ACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || ||||| || ||||| || || || || || |||||||| Sbjct 1248953 ACACCCACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 1248996 >seq1974 Length=2663464 Score = 192 bits (212), Expect = 7e-44 Identities = 370/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 1499114 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 1499173 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || || || || || ||||| || || || || || |||| ||||| Sbjct 1499174 AAGTCCTGCAGCAGTTTCTGGATCTTTGGGATACGAGTAGACCCGCCAACCAGCACGATG 1499233 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||| || |||| ||| | || || || | ||||| ||||| |||| Sbjct 1499234 TCATGGATCTGCGACTTGTCGAGCTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAGG 1499293 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| ||| || ||||| || || |||||||||||||| ||| Sbjct 1499294 GTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCGGGTAATGGATGTGTAG 1499353 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||||||||| || | | |||| | ||||| | Sbjct 1499354 AAGTCAATACCCTCATAGAGAGAATCAATTTCGATACTGGCCTGTGTGCTAGAAGACAGA 1499413 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| ||||| || || | || |||| || | | ||| || Sbjct 1499414 GTACGCTTTGCACGCTCGCACGCAGTGCGGAGGCGGCGAACTGCTCTCTTGTTCTCGCTG 1499473 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || | ||||| || || | | | | Sbjct 1499474 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTT---G 1499530 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 1499531 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTTACCTCAAAGATGCCG 1499590 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || || Sbjct 1499591 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACA 1499650 Query 7577 TTC 7579 ||| Sbjct 1499651 TTC 1499653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635039189364440