Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2186 122 2e-22 seq673 107 4e-18 seq168 89.7 1e-12 >seq2186 Length=3828881 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| || | || || | ||||||||| ||||| Sbjct 2467708 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 2467767 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || | || || || || ||||||||||| ||||| || || || Sbjct 2467768 CTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTT 2467827 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| |||||||||||||| ||| || || || ||||| | ||||| || Sbjct 2467828 GGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCTTGCC 2467884 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| || || ||||| | ||||||| Sbjct 2467885 CGTCAGGGTCTTCACGAAGATCTGCATTT 2467913 Score = 116 bits (128), Expect = 8e-21 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| || | || || | ||||||||| ||| | Sbjct 2468078 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCGG 2468137 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || | || || ||||| |||||||| || ||||| || || || Sbjct 2468138 CTTGCCAGCAAAGATCAGCCTCTGCTGCTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 2468197 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| |||||||||||||| ||| || || || ||||| | ||||| || Sbjct 2468198 GGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCTTGCC 2468254 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| || || ||||| | ||||||| Sbjct 2468255 CGTCAGGGTCTTCACGAAGATCTGCATTT 2468283 >seq673 Length=3179169 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || | |||||| || ||||| ||||| || | || | | ||| ||||| Sbjct 2476488 ACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCC 2476547 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||| || | || ||||| || ||||| ||||| ||||| || Sbjct 2476548 AGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 2476607 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| || || |||||||||| ||||| Sbjct 2476608 ATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTG 2476667 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| | || || | ||||| Sbjct 2476668 CCAGTCAGAGTCGTCACAAAGATCTGCAT 2476696 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || | |||||| || ||||| ||||| || | || | | ||| ||||| Sbjct 2476716 ACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCC 2476775 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||| || | || ||||| || ||||| ||||| ||||| || Sbjct 2476776 AGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 2476835 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| || || |||||||||| ||||| Sbjct 2476836 ATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTG 2476895 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| | || || | ||||| Sbjct 2476896 CCAGTCAGAGTCGTCACAAAGATCTGCAT 2476924 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || | |||||| || ||||| ||||| || | || | | ||| ||||| Sbjct 2476944 ACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCC 2477003 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||| || | || ||||| || ||||| ||||| ||||| || Sbjct 2477004 AGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 2477063 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| || || |||||||||| ||||| Sbjct 2477064 ATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTG 2477123 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| | || || | ||||| Sbjct 2477124 CCAGTCAGAGTCGTCACAAAGATCTGCAT 2477152 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || | |||||| || ||||| ||||| || | || | | ||| ||||| Sbjct 2477172 ACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCC 2477231 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||| || | || ||||| || ||||| ||||| ||||| || Sbjct 2477232 AGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 2477291 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| || || |||||||||| ||||| Sbjct 2477292 ATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTG 2477351 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| | || || | ||||| Sbjct 2477352 CCAGTCAGAGTCGTCACAAAGATCTGCAT 2477380 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || | |||||| || ||||| ||||| || | || | | ||| ||||| Sbjct 2477400 ACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCC 2477459 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||| || | || ||||| || ||||| ||||| ||||| || Sbjct 2477460 AGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 2477519 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| || || |||||||||| ||||| Sbjct 2477520 ATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTG 2477579 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 2477580 CCAGTCAGGGTCTTCACAAAGATCTGCAT 2477608 >seq168 Length=1547359 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| || | || || | |||||||| ||||||||||| || || | Sbjct 795313 CTTTTTGAATATTGTAGTCAGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 795372 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || ||||| |||||||||||| Sbjct 795373 TCAGTCGCTGCTGGTCAGGAGGAATGCCT 795401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109313988187697