Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1587 123 3e-23 seq1389 105 8e-18 seq737 82.4 9e-11 >seq1587 Length=5570568 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||| |||||||| || | |||||||| | ||||||||| | Sbjct 1717226 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1717167 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 1717166 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCTGCAAAAG 1717107 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 1717106 CTACTACACGTTCTCC 1717091 >seq1389 Length=9232658 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 5780933 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5780992 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 5780993 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5781052 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 5781053 CAACCACTCTCTCACC 5781068 >seq737 Length=313774 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/153 (71%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961 || ||||||||| | | ||||||| | |||||| | ||| || || | ||||||| Sbjct 289337 CACCTACCTCATCTTTGCTGGTATATTCCACTATTTCTGTACACAGGTTGCTGCATTTGA 289396 Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021 | || |||| || || || || | |||| || | ||| ||||| ||||| | | Sbjct 289397 TGGTCCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTACG 289456 Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| || || || |||||||||||||||||| Sbjct 289457 GTGTGCCGGTCTCCGTCTGAGATTCAATGATAG 289489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562025952189240