Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1974 131 1e-24 >seq1974 Length=2663464 Score = 131 bits (144), Expect = 1e-24 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||||||||| || || |||||||| || ||||| ||||| Sbjct 1499926 GTTACTAATGCTGTGGTGACTGTACCAGCCTACTTCAATGACTCTCAGCGTCAGGCTACA 1499867 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||| || || |||||||| || ||||||||||| || || ||| Sbjct 1499866 AAAGATGCTGGAACTATTGCGGGGCTCAATGTTCTGCGAATTATCAATGAGCCAACAGCT 1499807 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 1499806 GCTGCGATAGCCTATGGTCTGGACAAA 1499780 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || |||||||||||| Sbjct 1498203 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATCGATGCC 1498144 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||| ||| ||||| ||||| Sbjct 1498143 AATGGCATCCTGAACGTGTCTGCTGTGGATAA 1498112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028672438742590