Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq737 89.7 1e-12 >seq737 Length=313774 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||| ||||| || || ||||| || || ||||| || Sbjct 290586 CTGGTTGGTTTCAACTCGCTTCATAAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTC 290645 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||| || || |||| ||| | | || | ||||||||| ||||| Sbjct 290646 TCTGGCTCGCTGCTCTTCTTTTCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTC 290705 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||||||| |||| ||| | ||| ||||||| || Sbjct 290706 CAAATGCCACGGCTCCAGGTAGATGGCAAAAGCCCCGGGTCTCT 290749 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| ||||||| | | || |||||||| ||||||||||| ||||||||| Sbjct 289342 ACCTCATCTTTGCTGGTATATTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 289401 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || ||| | ||| || ||| ||||| ||||| | || | Sbjct 289402 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTG 289461 Query 221852 CCAGTCTCCAGCTGAG 221867 || |||||| ||||| Sbjct 289462 CCGGTCTCCGTCTGAG 289477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928707899887040