Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq901 264 1e-65 seq2224 132 6e-26 >seq901 Length=1018657 Score = 264 bits (292), Expect = 1e-65 Identities = 654/989 (66%), Gaps = 5/989 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 920025 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 919966 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| | ||| || | Sbjct 919965 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTGCCCCAAAAA 919909 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||| | ||||| Sbjct 919908 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAAGGTGCACCTTTGGACACGT 919849 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | ||| | |||||| || |||| Sbjct 919848 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGCGCATTCATGTCAGAAACATCGT 919789 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | | ||| ||||| || || | || || | ||| | || ||||||| Sbjct 919788 ACTTGTTACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCACA 919729 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 ||| || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 919728 GGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTGC 919669 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | |||| || | |||| | || ||||| || || || || || || | Sbjct 919668 TTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAAA 919609 Query 160465 TCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 || | | ||| || | |||||| || || || | || | | Sbjct 919608 CTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTATTCTTTATTCTACCATCAA 919549 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | || | || |||||||| || || | ||||| |||||| || | Sbjct 919548 TAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCCGTTTCCA 919489 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 ||||| |||| | || | ||| | | || || || || |||| ||||| | | Sbjct 919488 AGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAG 919429 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 ||||||| | || || | |||||| | ||| ||||| || | || || || | Sbjct 919428 GAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGAT 919369 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 | ||||||| ||||||||||||||||| | |||||| ||||| || || || ||||||| Sbjct 919368 CTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCAAGAAGCATATACAACATTCTCTA 919309 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824 | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || | Sbjct 919308 ACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAAA 919250 Query 160825 ACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 | | || | |||||| ||| || || | ||| || | |||||||| || ||||| Sbjct 919249 AAAGATTCTGGAGCCTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATT 919190 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 919189 GATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATT 919130 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 ||||| || | || |||| || || | | | | ||| |||| |||||| | || Sbjct 919129 GGAAATTCTGCTTCTTCGCTGCTGAGAGGTTCCATAATGTATTTTCTAGTCTTGGTGAAG 919070 Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 919069 GAGGCACAGTCTGCTGTCATGTTAATATA 919041 >seq2224 Length=14638873 Score = 132 bits (146), Expect = 6e-26 Identities = 575/893 (64%), Gaps = 46/893 (5%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 |||||| || || || || || ||||| | ||| || |||||| ||||||| || Sbjct 6014840 GTCGAACTTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCACGTCGCCCAC 6014896 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||| | | | || ||| || |||| |||| |||| |||||||| | || || | Sbjct 6014897 CCCGTAGATGGAGCCGGCGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCCT 6014956 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 ||| || || ||||| |||||| || | | || | || | ||| ||||| Sbjct 6014957 GCTGGTGTCGCCCTCCAGGTACTCCCACTTGACCAGGCGGGGCAGGGCGTTCATATCGGA 6015016 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | | | | |||| || |||| | |||||| || ||||||||||| || | ||||| Sbjct 6015017 GAGCTGGAACTTGTCATTCTGGGGCATGGCACCTGGCACGCCGGGCATGCGGTTGAGGGT 6015076 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGA 160395 |||||| | ||| ||||| |||||||| |||||||| | ||| || | ||||| || | Sbjct 6015077 GGCCCAGACGTGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGCTGC-- 6015134 Query 160396 TTAACCTG----TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCG 160451 | | || || | || | ||| ||| ||| | || || || | ||||||| Sbjct 6015135 --ACCGTGGGGTTCTCAAAG-ATGTGCTGCACGAAGGCCCGCGTGACCACGATGTACGCG 6015191 Query 160452 CTGCCGGAGAATATCGG-----TATGGGTATAGGCGGC-GTGTCTTTGT-CCTGACCGGT 160504 |||| | ||| || || | |||| |||||| || ||| ||| | | |||| Sbjct 6015192 TTGCCCGTGAACATGGGAGAGTTGTGGG--GTGGCGGCTGTTTCTCTGTGGCGGTCCGG- 6015248 Query 160505 GTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTT--GTGC 160562 || | | | | ||| | || | | || ||| | || ||| | || Sbjct 6015249 ----GAGATGA---ACTGCCCCACTTCATGGTGGTACTGCCAGCGCTCCCGCTTCAGGGC 6015301 Query 160563 GGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACG 160622 | || | | || | ||| | ||||| || | ||| ||||| |||| Sbjct 6015302 CGAGGGCTTC--TCTGACTCCATGCTGTTCCGCCCCTGCAGCACCTTCAGGGCACGGACG 6015359 Query 160623 ATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCAT 160682 ||||| ||| ||||||| || || ||||| ||||| ||| | | ||| ||| Sbjct 6015360 ATCTCGGCGTTGGTCTTGATGGGGAAATCGGTGCCGCAGGTGTTGAGGATGTAGCGCCA- 6015418 Query 160683 TTCGCGCTCAGGTC-GTG---CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738 || || |||| | || ||||||| |||||| || | || ||||||| ||| Sbjct 6015419 --CG-GCACAGGGCTCTGCAACAGGTCCTGCATGCAGTTCAGGTCGGCCTGCAGCCGGGA 6015475 Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798 |||||| || || || || || || || || ||||||||||| || ||| || | Sbjct 6015476 CCAGGAGGCATAGACCACCTTTTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAGGC 6015535 Query 160799 CACGATTCCCACCACCGCCAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACG 160856 |||| || ||| ||| ||| || | | ||| | ||| | ||| ||| Sbjct 6015536 TGCGATGGCCCGCACGGCCTCCTGGAAGGCAGC--CGGGGACTTGCCGTCAATGTGGACG 6015593 Query 160857 CAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTA 160916 || || | |||||| || ||||||| || || || | || |||||||||||| || || Sbjct 6015594 CAGTAGACGTTCTGGGGGGCGTAGAGGGACCGCAGGAGCCGCTCGAACATCTCGATTTTG 6015653 Query 160917 TGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | ||||| || || |||||||| || || ||||| | |||||| | ||||| Sbjct 6015654 TTGTGGATGACCATGGAGTAGGCGATGGGGAACTCCGCCTCCTCCTGGCTCAG 6015706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577134125105160