Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2456 170 2e-36 seq1930 170 2e-36 seq1663 170 2e-36 seq1595 170 2e-36 seq1155 132 6e-25 seq1039 125 9e-23 >seq2456 Length=4228489 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 7142 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 7083 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 7082 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 7023 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 7022 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 6963 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 6962 GCACCTGCTTCAGCACCTTGTA 6941 >seq1930 Length=317118 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 25109 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 25050 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 25049 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 24990 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 24989 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 24930 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 24929 GCACCTGCTTCAGCACCTTGTA 24908 >seq1663 Length=24702 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 11224 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 11283 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 11284 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 11343 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 11344 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 11403 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 11404 GCACCTGCTTCAGCACCTTGTA 11425 >seq1595 Length=55366 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 45796 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 45855 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 45856 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 45915 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 45916 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 45975 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 45976 GCACCTGCTTCAGCACCTTGTA 45997 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 53554 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 53495 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 53494 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 53435 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 53434 TGTCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTGGATGAGATGCCCGTGTCGGGGT 53375 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 53374 GCACCTGCTTCAGCACCTTGTA 53353 >seq1155 Length=1068339 Score = 132 bits (146), Expect = 6e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || || ||| | || | |||||| ||||||||||| || | | || Sbjct 861550 GCTTGGCCAACTCACCAAGCAGCAGGAGCCACACGGCCGTCTGGATCTCCCGTGAGGTGA 861609 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| || |||||| |||||||||| | ||||||| || | |||| || | | Sbjct 861610 TGGTGGAGCACTTGTTGTAGTGCGCCAGGTGCGAGGCCTCGCTGGCAATGCACTCAAAGA 861669 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || |||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 861670 TGTCATTTGCAAAGGAGTTCATGATGCCCATGGCCTTGGACAAGATGCCCATGTCGGGGT 861729 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||||||||| Sbjct 861730 GCACCTGCTTCAGCACCTTGTAGATG 861755 >seq1039 Length=2233811 Score = 125 bits (138), Expect = 9e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||||||||| || ||||| ||||| || | | || ||| ||||||||| |||| || Sbjct 1986151 CAGGCGCACAGCCGTCTGAATCTCCCGGGAGGTAATGGTGGAGCGCTTGTTGTAGTGGGC 1986210 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| ||| ||| || ||||||| || | ||||| ||||| || |||||||||| Sbjct 1986211 CAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCATTGACGAAGGAGTTCATGAT 1986270 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546 ||| | |||| ||||||||| ||||||||| |||||||| ||||||||||||| Sbjct 1986271 GCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGTAGA 1986329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106171575322747