Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2186 113 4e-20 seq673 91.5 1e-13 >seq2186 Length=3828881 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 2467911 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2467852 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 2467851 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAG 2467792 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | |||| || || ||| Sbjct 2467791 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2467732 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || |||||||| |||| Sbjct 2467731 ATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCG 2467697 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 2468281 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2468222 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 2468221 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAGCAG 2468162 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || | |||||| ||| | | | | |||| || || ||| Sbjct 2468161 CAGAGGCTGATCTTTGCTGGCAAGCCGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2468102 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || |||||||| |||| || | || ||| Sbjct 2468101 ATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGCCTGAGGGGTGGC 2468054 >seq673 Length=3179169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| || || || || || Sbjct 2477608 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477549 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 2477548 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477489 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || |||||||||| || |||||||| || | | | |||| || || ||| Sbjct 2477488 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2477429 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || | || || | ||| |||| || | || ||| Sbjct 2477428 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2477381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | | || || || || || || ||||| || || || || || Sbjct 2476696 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476637 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 2476636 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476577 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || |||||||||| || |||||||| || | | | |||| || || ||| Sbjct 2476576 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476517 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || | || || | ||| |||| || | || ||| Sbjct 2476516 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | | || || || || || || ||||| || || || || || Sbjct 2476924 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476865 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 2476864 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476805 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || |||||||||| || |||||||| || | | | |||| || || ||| Sbjct 2476804 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476745 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || | || || | ||| |||| || | || ||| Sbjct 2476744 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | | || || || || || || ||||| || || || || || Sbjct 2477152 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477093 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 2477092 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477033 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || |||||||||| || |||||||| || | | | |||| || || ||| Sbjct 2477032 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476973 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || | || || | ||| |||| || | || ||| Sbjct 2476972 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2476925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | | || || || || || || ||||| || || || || || Sbjct 2477380 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477321 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 2477320 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477261 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || |||||||||| || |||||||| || | | | |||| || || ||| Sbjct 2477260 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2477201 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || | || || | ||| |||| || | || ||| Sbjct 2477200 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGGC 2477153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449831290717480