Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2456 224 2e-52 seq1663 224 2e-52 seq1595 224 2e-52 seq1930 215 8e-50 seq1039 178 2e-38 seq1155 145 1e-28 >seq2456 Length=4228489 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 7181 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 7122 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 7121 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 7062 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 7061 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 7002 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 7001 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 6942 Query 1485710 AAAC 1485713 | || Sbjct 6941 ACAC 6938 >seq1663 Length=24702 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 11185 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 11244 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 11245 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 11304 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 11305 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 11364 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 11365 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 11424 Query 1485710 AAAC 1485713 | || Sbjct 11425 ACAC 11428 >seq1595 Length=55366 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 45757 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 45816 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 45817 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 45876 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 45877 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 45936 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 45937 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 45996 Query 1485710 AAAC 1485713 | || Sbjct 45997 ACAC 46000 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 53593 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 53534 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 53533 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 53474 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 53473 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 53414 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 53413 TGATGCTCATGGCCTTGGATGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 53354 Query 1485710 AAAC 1485713 | || Sbjct 53353 ACAC 53350 >seq1930 Length=317118 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| | | |||||||| ||||||| |||||| ||| Sbjct 25148 TGTACTTGGTGACGGCCTTGGTGCCCTCGGGGGCGGCGTGCTTGGCCAGCTCGCCGGGCA 25089 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 25088 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 25029 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 25028 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 24969 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 24968 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 24909 Query 1485710 AAAC 1485713 | || Sbjct 24908 ACAC 24905 Score = 154 bits (170), Expect = 2e-31 Identities = 179/244 (73%), Gaps = 22/244 (9%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 13074 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 13015 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 13014 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGG 12955 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||| | ||| ||| || || ||||||| Sbjct 12954 GCGCCAGGCGCGACGCCCC---GCC----CGGCCG---------------AAGGAGTTCA 12917 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 12916 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 12857 Query 1485710 AAAC 1485713 | || Sbjct 12856 ACAC 12853 Score = 118 bits (130), Expect = 2e-20 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 50929 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 50988 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTG 1485582 | || |||||||| ||||||||||| || | | ||| ||| ||||||| Sbjct 50989 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGGGCGCTTG 51041 Score = 111 bits (122), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 26069 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 26128 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | || |||||||| ||||||||||| || Sbjct 26129 GCAGGAGCCGCACGGCCGTCTGGATCTCCCG 26159 Score = 111 bits (122), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 28454 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 28395 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | || |||||||| ||||||||||| || Sbjct 28394 GCAGGAGCCGCACGGCCGTCTGGATCTCCCG 28364 Score = 111 bits (122), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 44733 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 44674 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | || |||||||| ||||||||||| || Sbjct 44673 GCAGGAGCCGCACGGCCGTCTGGATCTCCCG 44643 >seq1039 Length=2233811 Score = 178 bits (196), Expect = 2e-38 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| |||||| || || | | Sbjct 1986087 TGTACTTGGTGACAGCCTTGGTGCCCTCCGAGACAGCGTGCTTGGCCAACTCTCCCGGGA 1986146 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| ||||| |||| | || ||| ||||||||| | Sbjct 1986147 GCAGCAGGCGCACAGCCGTCTGAATCTCCCGGGAGGTAATGGTGGAGCGCTTGTTGTAGT 1986206 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | ||||| ||||| || ||||||| Sbjct 1986207 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCATTGACGAAGGAGTTCA 1986266 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 1986267 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 1986326 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 1986327 AGACATAGATGGAGTA 1986342 >seq1155 Length=1068339 Score = 145 bits (160), Expect = 1e-28 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 1485486 CTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGC 1485545 |||||| ||||| |||| || |||| |||||| || || ||| | || | |||||| Sbjct 861527 CTTGGTGCCCTCGGAGATGGTGTGCTTGGCCAACTCACCAAGCAGCAGGAGCCACACGGC 861586 Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGC 1485605 ||||||||||| || | | ||| ||| || |||||| | |||||||| | ||| Sbjct 861587 CGTCTGGATCTCCCGTGAGGTGATGGTGGAGCACTTGTTGTAGTGCGCCAGGTGCGAGGC 861646 Query 1485606 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTT 1485665 |||| || | |||| || | ||||| || |||| ||||||||||| ||| | || Sbjct 861647 CTCGCTGGCAATGCACTCAAAGATGTCATTTGCAAAGGAGTTCATGATGCCCATGGCCTT 861706 Query 1485666 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 | ||||||||| |||||||||||||||||| ||||||||||| Sbjct 861707 GGACAAGATGCCCATGTCGGGGTGCACCTGCTTCAGCACCTTGTA 861751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914992137551249