Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2398 100 2e-15 >seq2398 Length=1710257 Score = 100 bits (110), Expect = 2e-15 Identities = 318/487 (65%), Gaps = 6/487 (1%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | || || || |||||||||||||| | ||||| ||||| || || ||||||| Sbjct 1247535 CGGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGAGGGA 1247594 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || ||||| || | | |||| | ||||| || || || | Sbjct 1247595 CTCCACGGGGCGCCGGGGGGATGCCCGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 1247654 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGA-TAGTA-ACTACAGTTTGATTATCTGA 281601 | || | | ||||||||| | | |||| || | ||| | | || || ||||| Sbjct 1247655 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGA 1247712 Query 281602 ATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || || || |||| | || ||| ||||| || ||||| | | || | | Sbjct 1247713 GTAGGTGGTGAA-GGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAG 1247771 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 |||||| | ||||||||||| || | || || || ||||| |||||||| | || | Sbjct 1247772 CGGTCATCACGCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 1247831 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || || | || ||| | | || | || || || ||||| | ||||||| Sbjct 1247832 GCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATGGCCGCTTGCACGGCAGCAC 1247891 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 | || |||||||| ||||| || || | | | || || | ||| |||||||| || | Sbjct 1247892 CGTAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTCAGCTCTTTGCCATTGAAGAAGT 1247951 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 || |||| | | |||||| ||||| | || || || || | || || || | Sbjct 1247952 CCTGTAGCAGTTTTTGGATCTTAGGGATACGGGTAGAGCCACCCACCAGCACGATCTCCT 1248011 Query 281901 GCACCTG 281907 | | ||| Sbjct 1248012 GGATCTG 1248018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740051511728766