Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1469 107 3e-18 seq2459 86.0 8e-12 >seq1469 Length=1915686 Score = 107 bits (118), Expect = 3e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712 || ||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 886596 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 886537 Query 8713 GATTCCCCGACGAGGAG 8729 |||||||||||| |||| Sbjct 886536 GATTCCCCGACGGGGAG 886520 Score = 104 bits (114), Expect = 3e-17 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 886594 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 886535 Query 11786 TTCCCCGACGAGGAGGGAG 11804 |||||||||| ||||| || Sbjct 886534 TTCCCCGACGGGGAGGAAG 886516 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 886520 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 886579 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 886580 TACTAACGAGGA 886591 >seq2459 Length=1257301 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11724 ACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTT 11782 |||| |||| |||||||||||||| ||||| ||| ||||| ||| |||||||||||| Sbjct 1097396 ACCCCATCCTTGTTAGTATAGTGGTGAGTATCCCCACCTGTCACACAAGAGACCGGGGTT 1097455 Query 11783 CGATTCCCCGACGAGGAGG 11801 |||||||| |||| ||||| Sbjct 1097456 CGATTCCCTGACGGGGAGG 1097474 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||| |||||||||||||| ||||| ||| ||||| ||| |||||||||||||||||| Sbjct 1097402 TCCTTGTTAGTATAGTGGTGAGTATCCCCACCTGTCACACAAGAGACCGGGGTTCGATTC 1097461 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 1097462 CCTGACGGGGAG 1097473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652748578837040