Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq901 149 7e-31 seq2224 109 6e-19 >seq901 Length=1018657 Score = 149 bits (164), Expect = 7e-31 Identities = 545/846 (64%), Gaps = 22/846 (3%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || | || || || || || || || || || || || ||||| Sbjct 919936 ATCCAGTTCAGGTCTCCTGCCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 919877 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | ||| || || || |||| |||||||| || ||||| Sbjct 919876 GGTGGGTAAGGTGCACCTTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTG 919817 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || |||||||||| ||| || | || || || || || Sbjct 919816 GCCAGCGCATTCATGTCAGAAACATCGTACTTGTT-ACTAGAAGAAACTGCACCCGGGAC 919758 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || |||||||||| || ||||| || || || || || | Sbjct 919757 TTCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGC 919698 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||||| | | |||| | | || | ||| || | || Sbjct 919697 CCACTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATACGTATTCTACAAATCTTCT 919641 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| || || | | | ||| || | | ||| Sbjct 919640 GCTAACTACAAAATAGGCACTACCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTT 919581 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || || || || | || || | | | | || || ||||||| | Sbjct 919580 GTCTATGCCTGTATTCTTTATTCTACCATCAATAATCTCATGGTGTTTTTTCCACCTTAC 919521 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 919520 TTCTTTA----TAAACAGGCATTTTTTCCGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 919465 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 919464 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 919405 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || ||| ||||| | | ||||| | ||| |||| Sbjct 919404 TTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATATCTGCCT 919345 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || || || || |||| ||| ||| | ||||||||| | Sbjct 919344 GCACCCTGCTCCAAGAAGCATATACAACATTCTCTAACTGGCTGGAAATAAAGACATTAT 919285 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| || || | || | || || | ||| | | Sbjct 919284 CAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGCCTTTT--TGT 919228 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 919227 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 919168 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || || || || || || || || || || |||| | Sbjct 919167 TCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCGCTGC 919108 Query 162989 TGAGAG 162994 |||||| Sbjct 919107 TGAGAG 919102 >seq2224 Length=14638873 Score = 109 bits (120), Expect = 6e-19 Identities = 254/377 (67%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669 ||||| || ||| || ||||||| ||| || ||||| |||||||| | ||| Sbjct 6015324 CTGTTCCGCCCCTGCAGCACCTTCAGGGCACGGACGATCTCGGCGTTGGTCTTGATGGGG 6015383 Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATC 162728 || |||||||||||| || | | || |||| || | || | | ||| || Sbjct 6015384 AAATCGGTGCCGCAGGTGTTGAGGATGTAGCGCCACGGCACAGGGC-TCTGCAACAGGTC 6015442 Query 162729 CTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAA 162788 ||| | |||||||| |||||||| | || ||| || || || || || | |||| Sbjct 6015443 CTGCATGCAGTTCAGGTCGGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCCAG 6015502 Query 162789 CCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA 162848 | | || |||||||||||| ||| || | | || || ||||||| ||| Sbjct 6015503 GCGGCTAGCCACAAAGACATTGGGGAAGCAGGCTGCGATGGCCCGCACGGCCTCCTGGAA 6015562 Query 162849 --CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATG 162906 || | || ||| || || | ||| |||||||| | ||||| |||||||||| | Sbjct 6015563 GGCAGCCGGGGA-CTTGCCG-TCAATGTGGACGCAGTAGACGTTCTGGGGGGCGTAGAGG 6015620 Query 162907 GCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATG 162966 | || ||| | | |||||||||||| || || | ||| | || || || || || ||| Sbjct 6015621 GACCGCAGGAGCCGCTCGAACATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGATG 6015680 Query 162967 GGGAACTCAGCCTCCTC 162983 |||||||| |||||||| Sbjct 6015681 GGGAACTCCGCCTCCTC 6015697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578346746353600