Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq185 127 6e-26 seq2461 122 3e-24 seq346 118 3e-23 seq1602 104 7e-19 seq1039 98.7 3e-17 seq750 98.7 3e-17 seq1823 82.4 2e-12 >seq185 Length=15199 Score = 127 bits (140), Expect = 6e-26 Identities = 72/73 (99%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4510 GGCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 4451 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 4450 CCCGGGCTTCAGC 4438 >seq2461 Length=28468 Score = 122 bits (134), Expect = 3e-24 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6951 GCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 6892 Query 2829 CCGGGCTTCAGC 2840 | |||||||||| Sbjct 6891 CTGGGCTTCAGC 6880 >seq346 Length=20800 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 7534 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 7475 Query 2828 CCCGGGCTTCAGC 2840 |||||||||| || Sbjct 7474 CCCGGGCTTCGGC 7462 >seq1602 Length=447800 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 219278 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 219219 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 219218 CCGGGTTTCGGC 219207 >seq1039 Length=2233811 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 899232 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 899173 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 899172 CCGGGTTTCGGC 899161 >seq750 Length=2190488 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1618441 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1618382 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1618381 CCGGGTTTCGGC 1618370 >seq1823 Length=121463 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||| ||| ||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 88695 TAGCTCAGCTGGCAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 88752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847555971195