Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2186 125 6e-24 seq673 113 4e-20 >seq2186 Length=3828881 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 2467721 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 2467780 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| |||| |||| || ||||||||| |||||| ||| | | | Sbjct 2467781 ATCAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 2467840 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||||| ||||| || || ||||||| || ||||| Sbjct 2467841 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 2467900 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 2467901 AAGATCTGCATT 2467912 >seq673 Length=3179169 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | || || ||| |||| ||||||||||| || ||||| Sbjct 2476505 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2476564 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 | || || ||||||||| | |||| | ||||||||| |||||| ||||| | | Sbjct 2476565 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2476624 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | | || ||||| | || || || || || |||| ||| |||| Sbjct 2476625 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCAC 2476684 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2476685 AAAGATCTGCAT 2476696 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | || || ||| |||| ||||||||||| || ||||| Sbjct 2476733 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2476792 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 | || || ||||||||| | |||| | ||||||||| |||||| ||||| | | Sbjct 2476793 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2476852 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | | || ||||| | || || || || || |||| ||| |||| Sbjct 2476853 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCAC 2476912 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2476913 AAAGATCTGCAT 2476924 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | || || ||| |||| ||||||||||| || ||||| Sbjct 2476961 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2477020 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 | || || ||||||||| | |||| | ||||||||| |||||| ||||| | | Sbjct 2477021 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2477080 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | | || ||||| | || || || || || |||| ||| |||| Sbjct 2477081 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCAC 2477140 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2477141 AAAGATCTGCAT 2477152 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | || || ||| |||| ||||||||||| || ||||| Sbjct 2477189 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2477248 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 | || || ||||||||| | |||| | ||||||||| |||||| ||||| | | Sbjct 2477249 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2477308 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | | || ||||| | || || || || || |||| ||| |||| Sbjct 2477309 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCAC 2477368 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2477369 AAAGATCTGCAT 2477380 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | || || ||| |||| ||||||||||| || ||||| Sbjct 2477417 CTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 2477476 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 | || || ||||||||| | |||| | ||||||||| |||||| ||||| | | Sbjct 2477477 GACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2477536 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | | || ||||| | || || || || || |||| || ||||| Sbjct 2477537 CTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCAC 2477596 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2477597 AAAGATCTGCAT 2477608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450727158658280