Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1389 138 2e-27 seq1587 134 2e-26 seq737 100 4e-16 >seq1389 Length=9232658 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 5780933 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 5780992 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 5780993 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 5781052 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 5781053 CAACCACTCTCTCACC 5781068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||| ||||| | ||| |||||||| || ||||||||||| || ||||||||||||| | Sbjct 5785659 AAAGCTTTCTCACCAGGTTTTCATTTACGATTCCATCACTGGCTGCAAAAAATGCCAGAA 5785718 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||| ||||| ||||||||||| | | ||| || ||||||| Sbjct 5785719 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGT 5785763 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 5783468 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 5783527 Query 39854 AA 39855 || Sbjct 5783528 AA 5783529 >seq1587 Length=5570568 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | |||||||||||| |||||||||||||||| || | || | Sbjct 1717226 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 1717167 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 1717166 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCTGCAAAAG 1717107 Query 39759 CAAC 39762 | || Sbjct 1717106 CTAC 1717103 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| |||||||| | || |||||||| || || ||||| || ||||| || ||||| Sbjct 1718525 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 1718466 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 ||||| || || ||||||||||| ||||| ||||| ||| || ||| Sbjct 1718465 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 1718417 >seq737 Length=313774 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| |||| ||| || ||||||||||| ||||| || | || || || ||||| || | Sbjct 296936 CACTGAATACTTTCTTCGTTTCCTTGTGCAAATTGGACACCGCAATCCTTGCTGCCAGGA 296995 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 |||| |||||||| || | || || || || || |||| ||||| | |||||| | Sbjct 296996 TAGCGTAGTCAGGGTGCTTGGTGGTCAGGGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 297055 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || ||||| ||||| |||||||||| Sbjct 297056 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCATGG 297103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||| || || |||||| || | || || || || || || | Sbjct 282928 TCCACCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 282987 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || |||||||||||||||||||| ||||| ||||| || | | | | | Sbjct 282988 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 283047 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | || ||||| | |||||| | | ||| || | || || |||| Sbjct 283048 TCTGGGAGATCTCCCACACTGTCTTATAGAGCTGCTTCAAGTCGTCAGGAA 283098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686807558229240