Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1587 104 2e-17 seq11789 98.7 8e-16 seq1389 87.8 1e-12 >seq1587 Length=5570568 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||| || | |||| || || ||||| ||||| || || ||||| || ||||||| Sbjct 1715076 AAGAAGTAAAAATCACAGAGGCTCGTTGTTTCTATGGCTTCCAGATTGCTATGGAAAATA 1715135 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 | ||||||||||||||||||||||| || || || ||||| |||||| Sbjct 1715136 TACATTCGGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 1715182 >seq11789 Length=4909933 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 837676 TGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 837617 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| | || || || ||||||||||| || || || || || || | Sbjct 837616 CTTGCCAACTCTATCAGCGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 837557 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 837556 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 837520 >seq1389 Length=9232658 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| ||||| ||| Sbjct 5784684 CCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCGGAGATG 5784625 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 5784624 TACAGCTTGCTCATAGACACCTACATCAAAGAT 5784592 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||| ||| | || || ||||| || | ||||||||| ||||||||||| | || |||| Sbjct 5787538 GGTTCGTCATCTTCCCCATTCAGTACCCAGACATATGGAAAATGTACAAACAGGCTCAGG 5787479 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || ||||||||||||||||| || Sbjct 5787478 CCTCCTTTTGGACAGCAGAAGAGGT 5787454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397398884454955