Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2186 168 8e-37 seq673 158 1e-33 >seq2186 Length=3828881 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || || ||||||||| | | Sbjct 2468282 AATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2468223 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| || Sbjct 2468222 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAGCA 2468163 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| |||| || || |||| || ||||| | ||||| || Sbjct 2468162 GCAGAGGCTGATCTTTGCTGGCAAGCCGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2468103 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || | ||| |||| || | ||||| Sbjct 2468102 CATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGCCTGAGGGGTGG 2468055 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || || ||||||||| | | Sbjct 2467912 AATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 2467853 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || ||||||||||| || ||||| || || || Sbjct 2467852 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCA 2467793 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2467792 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 2467733 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || | ||| |||| || | ||||| Sbjct 2467732 CATCCAGAAGGAATCCACCCTGCACTTGGTCCTGCGCCTGAGGGGTGG 2467685 >seq673 Length=3179169 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| ||||| |||||||||||| | || Sbjct 2477608 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477549 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 2477548 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477489 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | ||||| || ||||| || || || | || |||| | ||||| || Sbjct 2477488 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2477429 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| | || ||||| || |||| || | ||||| Sbjct 2477428 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGG 2477382 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| | ||| || || |||||||| ||||| |||||||||||| | || Sbjct 2476696 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476637 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 2476636 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476577 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | ||||| || ||||| || || || | || |||| | ||||| || Sbjct 2476576 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476517 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| | || ||||| || |||| || | ||||| Sbjct 2476516 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGG 2476470 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| | ||| || || |||||||| ||||| |||||||||||| | || Sbjct 2476924 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2476865 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 2476864 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2476805 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | ||||| || ||||| || || || | || |||| | ||||| || Sbjct 2476804 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476745 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| | || ||||| || |||| || | ||||| Sbjct 2476744 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGG 2476698 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| | ||| || || |||||||| ||||| |||||||||||| | || Sbjct 2477152 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477093 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 2477092 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477033 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | ||||| || ||||| || || || | || |||| | ||||| || Sbjct 2477032 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2476973 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| | || ||||| || |||| || | ||||| Sbjct 2476972 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGG 2476926 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| | ||| || || |||||||| ||||| |||||||||||| | || Sbjct 2477380 ATGCAGATCTTTGTGACGACTCTGACTGGCAAGACCATTACCCTTGAGGTTGAGCCCCGT 2477321 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 2477320 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 2477261 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | ||||| || ||||| || || || | || |||| | ||||| || Sbjct 2477260 CAGAGGCTGGTCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCCCCCTGTCTGACTACAAC 2477201 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| | || ||||| || |||| || | ||||| Sbjct 2477200 ATTCAGAAGGAGTCCTCCCTCCATCTCGTGCTGCGCCTGAGGGGTGG 2477154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570226343375920