Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2224 226 4e-54 seq11671 141 1e-28 seq1765 120 4e-22 >seq2224 Length=14638873 Score = 226 bits (250), Expect = 4e-54 Identities = 626/951 (66%), Gaps = 14/951 (1%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| ||||||||||| ||||| |||| | | | || ||| Sbjct 6015780 CGCCCGGCGAGTACCTGAACATGACGAAGAACTGCAGCAGCTTCAAGGAGAGCCGGCGGT 6015721 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 ||| | || ||||||| ||| |||| ||||| |||||||||||||| || || | Sbjct 6015720 TCATCGAGTTCCCGCTGAGCCAGGAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTCA 6015661 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 ||||| |||| ||||||||||||||||| |||||| || || |||||||||| |||||| Sbjct 6015660 TCCACAACAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACG 6015601 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839 |||||||||||||| | ||| ||||||| | | ||| || ||| ||||| Sbjct 6015600 TCTACTGCGTCCACATTGACGGCAAGTCCCCGGCTGCCTTCCAGGAGGCCGTGCGGGCCA 6015541 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899 |||| |||||||| || || |||| ||| ||| | | ||||| || | || Sbjct 6015540 TCGCAGCCTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCT 6015481 Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959 ||||| || ||||||||||||| | ||||||| ||||||| ||| || Sbjct 6015480 CCTGGTCCCGGCTGCAGGCCGACCTGAACTGCATGCAGGACCTGTTGCAGAGCCCTGTGC 6015421 Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019 |||| | ||| | |||||| ||||| | || ||||| ||||||||||| |||| Sbjct 6015420 CGTGGCGCTACATCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCCGAGA 6015361 Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCC 14077 |||| || || ||||||| ||| || |||| | ||||| || || | | | | Sbjct 6015360 TCGTCCGTGCCCTGAAGGTGCTGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCT--C 6015303 Query 14078 CAACCACAAGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGG 14136 || |||| | | ||| ||| | | || | |||| ||| | | | Sbjct 6015302 GGCCCTGAAGCGGGAGCGCTGGCAGTACCA-CCATGAAGTGG-----GGCAG-TTCATCT 6015250 Query 14137 TCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACG 14196 | |||| || | || ||||| || | || ||||| || |||| |||| Sbjct 6015249 CCCGGACCGCCACAGAGAAACAGCCGCCACCCCACAACTCTCCCATGTTCACGGGCAACG 6015190 Query 14197 CTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC 14256 | ||| | | |||||| |||| |||||| | | || | || || ||||| | Sbjct 6015189 CGTACATCGTGGTCACGCGGGCCTTCGTGCAGCACATCTTTGAGAACCCCACGGTGCAGC 6015130 Query 14257 TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGC 14316 | || | | ||| | ||||||| |||||||| ||||||||| | ||||||||| | Sbjct 6015129 AGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACCCTCA 6015070 Query 14317 AGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACA 14376 | | ||| ||| ||| || | || ||| | | ||||| | | ||| || | Sbjct 6015069 ACCGCATGCCCGGCGTGCCAGGTGCCATGCCCCAGAATGACAAGTTCCAGCTCTCCGATA 6015010 Query 14377 TGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGG 14436 || ||| | | | | ||||||||| | ||| ||||| || | || | || | Sbjct 6015009 TGAACGCCCTGCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGCGACACCAGCAGGGGCG 6014950 Query 14437 CCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCG 14496 | | |||||||| ||| |||| ||| | |||| || ||||| |||| |||| Sbjct 6014949 CGCCCTACCCGCCCTGCACCGGCCAGCACCAGCGCGCCGGCTCCATCTACGGGGTGGGCG 6014890 Query 14497 ACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||||| ||| || ||| | | ||||| || ||||||||||||||| Sbjct 6014889 ACGTGCCCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGAC 6014840 >seq11671 Length=2919 Score = 141 bits (156), Expect = 1e-28 Identities = 265/384 (69%), Gaps = 24/384 (6%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATG 13739 || |||| || || |||||||||||| || ||| || |||||| |||||| Sbjct 2263 GAGGAGGCCGCCTTCCCCATCGCCTACG---TCATGACCCTGCACAAGGAGTTCGAGACC 2319 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || ||||| ||| | ||||| | ||| || || ||| |||||||||||||||||||| Sbjct 2320 TTTGAGCGGCTCTTCAGGGCAGTGTACATGCCCCAAAACATCTACTGCGTCCACGTGGAC 2379 Query 13800 TCCAAGTC--CGGCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTCC 13854 ||||| | |||| | | ||| | |||| |||| | | | | ||||||| Sbjct 2380 ACCAAGGCGCCGGCCCC-----CTTCCAGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTCC 2434 Query 13855 CTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC----GC 13910 | |||| ||| ||| |||| | | ||||| ||||| ||| | | || Sbjct 2435 CCAACGCCTTCCTCGCCTCCCGGGCGGAGCGGGTGGTCTACGG----TGGTGCCTCCCGC 2490 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 ||| |||||||||| ||||||| |||||| ||||| |||| ||| | ||| Sbjct 2491 CTGCGGGCCGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTAC 2550 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 ||||||||| ||||| ||||||||| | |||||||||| ||||||||| | | | Sbjct 2551 CTGCTCAACGCCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCAGCTG 2610 Query 14031 CTGAAGGCCCTGGGCGGCAAGAAC 14054 ||||||| ||| || || |||||| Sbjct 2611 CTGAAGGGCCTCGGGGGGAAGAAC 2634 >seq1765 Length=3342749 Score = 120 bits (132), Expect = 4e-22 Identities = 281/414 (68%), Gaps = 19/414 (5%) Strand=Plus/Plus Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 ||| ||| | |||||||| ||||||| |||||| ||||| |||| ||| | Sbjct 3296888 CGCCTGCGGCCCGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTGGCGC 3296947 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 |||||||||||| ||||| ||||||||| | |||||||||| ||||||||| | | Sbjct 3296948 TACCTGCTCAACGCCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCAG 3297007 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAAC----GCCCTGGAGAGCGAGGGCATGCCCA-ACC 14082 |||||||| ||| || || |||||| |||||| | || | |||| | | Sbjct 3297008 CTGCTGAAGGGCCTCGGGGGGAAGAACATCACCCCTGGGGTGCTGCCACCCCCCCACATC 3297067 Query 14083 ACAAGCTGCACCGCATCAG-GAAGAGGCACGTGG--TGGC-CAGCGGCGGCGTGGTGGTC 14138 || | | ||||| || | | | ||| | | || ||| || | | | | ||||| Sbjct 3297068 ACCACCCGCACCAAATATGTGCACAGGGAGGGGGCCGGGCACAATGCCTTGGAGCTGGTC 3297127 Query 14139 AACACCGGCAG--GAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACG 14196 | | || ||| | |||||| || ||||| | || ||| |||||| || || Sbjct 3297128 ACCCCC--CAGCTGCGCAAGGCACCCCCGCCCCACAACATCACCATCTACTTTGGCTCCG 3297185 Query 14197 CTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGC---CGGTGG 14253 | ||| | || ||||||||| || ||||| || || || ||||| ||| | | | Sbjct 3297186 CATACGTGGCTGTCACCCGGCCCTTTGTGGAGTTTGTGCTGCAGGACCAGCGCGCCATCG 3297245 Query 14254 CCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307 ||||| ||| |||| ||||||||| ||||||||||| |||||| | |||| Sbjct 3297246 ATCTGCT--GGCA-TGGTCCGAGGACACCTACAGCCCCGATGAGCACTTCTGGG 3297296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658642110076160