Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2186 163 7e-35 seq673 145 2e-29 >seq2186 Length=3828881 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 2467700 AGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2467759 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 2467760 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 2467819 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| || ||||| ||| Sbjct 2467820 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2467879 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| || || | ||||||||| Sbjct 2467880 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 2467914 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 2468070 AGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2468129 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||| ||||||| || ||||| || | || || || || |||| || ||||||||| Sbjct 2468130 TCCAGCGGCTTGCCAGCAAAGATCAGCCTCTGCTGCTCTGGGGGAATGCCCTCCTTGTCC 2468189 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||||| || ||||| ||| Sbjct 2468190 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2468249 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| || || | ||||||||| Sbjct 2468250 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 2468284 >seq673 Length=3179169 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || | |||||| || || ||||| || || | |||| | || ||| Sbjct 2477397 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2477456 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || |||| || | || |||||||| |||| |||||||||||| Sbjct 2477457 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2477516 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| || || || ||| Sbjct 2477517 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2477576 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 2477577 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2477611 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || | |||||| || || ||||| || || | |||| | || ||| Sbjct 2476485 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2476544 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || |||| || | || |||||||| |||| |||||||||||| Sbjct 2476545 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2476604 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| || || || ||| Sbjct 2476605 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2476664 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||| | ||||| | |||||| Sbjct 2476665 TTGCCAGTCAGAGTCGTCACAAAGATCTGCAT 2476696 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || | |||||| || || ||||| || || | |||| | || ||| Sbjct 2476713 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2476772 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || |||| || | || |||||||| |||| |||||||||||| Sbjct 2476773 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2476832 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| || || || ||| Sbjct 2476833 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2476892 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||| | ||||| | |||||| Sbjct 2476893 TTGCCAGTCAGAGTCGTCACAAAGATCTGCAT 2476924 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || | |||||| || || ||||| || || | |||| | || ||| Sbjct 2476941 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2477000 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || |||| || | || |||||||| |||| |||||||||||| Sbjct 2477001 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2477060 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| || || || ||| Sbjct 2477061 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2477120 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||| | ||||| | |||||| Sbjct 2477121 TTGCCAGTCAGAGTCGTCACAAAGATCTGCAT 2477152 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || | |||||| || || ||||| || || | |||| | || ||| Sbjct 2477169 AGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGCCCGTCT 2477228 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || |||| || | || |||||||| |||| |||||||||||| Sbjct 2477229 TCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 2477288 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| || || || ||| Sbjct 2477289 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTAATGGTC 2477348 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||| | ||||| | |||||| Sbjct 2477349 TTGCCAGTCAGAGTCGTCACAAAGATCTGCAT 2477380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158976884371715