Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1587 107 3e-18 seq1389 107 3e-18 seq737 87.8 3e-12 >seq1587 Length=5570568 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | |||||||||||| ||||| |||||||||| ||| | || || Sbjct 1717224 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 1717165 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| || || || || || Sbjct 1717164 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCTGCAAAAGCT 1717105 Query 46774 AC 46775 || Sbjct 1717104 AC 1717103 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || ||||||||||| || ||||| || ||||| || ||||| Sbjct 1718525 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 1718466 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || |||||||| || ||||| ||||| Sbjct 1718465 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1718430 >seq1389 Length=9232658 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 5780935 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 5780994 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 5780995 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 5781054 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 5781055 ACCACTCTCTCACC 5781068 >seq737 Length=313774 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656 ||| || ||||||||||||||||| ||||| || |||| || || |||| || || | Sbjct 290598 AACTCGCTTCATAAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTG 290657 Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715 ||||| ||||| || ||||| |||||| || || ||||| | || || ||||||| | Sbjct 290658 CTCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACG 290716 Query 76716 GTTCTAGATATATCGCCATAACACCCGGTC 76745 | || || || || || | | | || |||| Sbjct 290717 GCTCCAGGTAGATGGCAAAAGCCCCGGGTC 290746 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| |||||||| || |||||| || | || || || || || || | Sbjct 282928 TCCACCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 282987 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTT 75552 | | ||||| || |||||||||||||||||||| || || ||||| || Sbjct 282988 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTT 283036 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||||||||| | ||| || || || || || || || || || Sbjct 296938 CTGAATACTTTCTTCGTTTCCTTGTGCAAATTGGACACCGCAATCCTTGCTGCCAGGATA 296997 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 || |||||||| || | || || ||| || || |||| || || | ||||| | | Sbjct 296998 GCGTAGTCAGGGTGCTTGGTGGTCAGGGTCGCAGCCGTTTCAGCAGCCAGCGTATCCAGT 297057 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || | || ||||| ||||| |||||||||| Sbjct 297058 TCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCATGG 297103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712829322381120