Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4467 244 1e-59 seq1587 102 8e-17 >seq4467 Length=226 Score = 244 bits (270), Expect = 1e-59 Identities = 167/188 (89%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||| Sbjct 39 CTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCC 98 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 ||||||| || |||||||||||||||||||| |||||||||||||||||||| || Sbjct 99 TGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACC 158 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 |||| ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 159 ACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGG 218 Query 8529 CTGGTCTC 8536 |||||||| Sbjct 219 CTGGTCTC 226 >seq1587 Length=5570568 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||| || | ||| |||||||| || | ||| ||||||||||||| ||| || Sbjct 1717224 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 1717165 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | |||||| |||| ||||| || || |||||||| || || || || || ||||| || Sbjct 1717164 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATCCCTTCCACTGCTGCAAAAGCT 1717105 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 1717104 ACTACACGT 1717096 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 23764 TCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTT 23823 |||| | |||| | || || || ||||| || | ||| |||||||| ||||| |||||| Sbjct 1715190 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCCGAATGTATATTT 1715131 Query 23824 TCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || ||||||||||| || ||||| ||||| | ||| || Sbjct 1715130 TCCATAGCAATCTGGAAGCCATAGAAACAACGAGCCTC 1715093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521411139187400