Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1210 150 3e-31 seq462 96.9 5e-15 >seq1210 Length=2251642 Score = 150 bits (166), Expect = 3e-31 Identities = 225/318 (71%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 1110654 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1110713 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || || || | ||| || |||||||| |||||||||||| | |||| Sbjct 1110714 TATTGATTATTTCAAAGCCTACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 1110773 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 1110774 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 1110833 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | |||||||||||||| || || |||||||| || | | || | ||||||||||| Sbjct 1110834 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 1110893 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 1110894 TAGCATCAATGTCTCCATAAAGTTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 1110953 Query 8588 TTATTAATAAAAAATAAC 8605 ||||| |||| || ||| Sbjct 1110954 TTATTGATAAGTAAAAAC 1110971 Score = 140 bits (154), Expect = 5e-28 Identities = 177/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 9246 GAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAAC 9305 ||||| ||| || |||||||| ||||| ||| ||| || ||||| || |||||||| | Sbjct 1112744 GAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGGAT 1112803 Query 9306 ATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTAC 9365 || || || | |||||||||||| ||||| || || || |||||||| | || || || Sbjct 1112804 GTCACAGACGCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAACCTGGGAC 1112863 Query 9366 CAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATA 9425 || ||||| |||| || ||||||| | ||| || ||| || | | ||||| || Sbjct 1112864 CAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGGTA 1112923 Query 9426 GATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||||| | | | | | ||| || || | || ||||||||||| || |||||||||| Sbjct 1112924 GATCATCT-CTGCGGCAGTGTCCTTTACTGTCGGTGGATACATTTCTCCATCAATCATCT 1112982 Query 9485 G 9485 | Sbjct 1112983 G 1112983 >seq462 Length=1760785 Score = 96.9 bits (106), Expect = 5e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 ||||||| ||||| ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 964026 CTCCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 964085 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| || | ||| | ||||| || || || || | ||||| Sbjct 964086 CCTTCAGGGAAAACGGAGCTCCTATCTCCACCATGCTTTCTCCAAAAATACCATTGGGCT 964145 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | || || || | || || || || | ||||| ||| |||| |||||| || || Sbjct 964146 GAGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCGATGTCTCCATATAG 964203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716771141320640