Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2186 134 1e-26 seq673 129 5e-25 >seq2186 Length=3828881 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| |||||||| ||||| ||||| || ||||||||| | || || Sbjct 2467703 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 2467762 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| || |||| ||||| || ||||||||| | Sbjct 2467763 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGG 2467822 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||| ||||||| || || || || Sbjct 2467823 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTG 2467882 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| ||||| ||||| |||||||| || Sbjct 2467883 CCCGTCAGGGTCTTCACGAAGATCTGCATTTT 2467914 >seq673 Length=3179169 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||| || | | ||||||||||||||| ||||| || |||| |||| Sbjct 2477391 AGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGC 2477450 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||||||||| || | ||| | ||| ||||| | ||||| | ||| Sbjct 2477451 CCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCC 2477510 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| | | ||| ||||| | || Sbjct 2477511 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTA 2477570 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 2477571 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2477611 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | ||| ||||| || | | ||||||||||||||| ||||| Sbjct 2476466 ACAGCCACCCCTCAGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTC 2476525 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || |||| |||| |||| || |||||||||||||| || | ||| | ||| ||||| | Sbjct 2476526 AGACAGGGGGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGG 2476585 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| | ||||||||| ||| || ||||| | | ||||| | | ||| Sbjct 2476586 GGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTC 2476645 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || ||||| ||| | || || ||||||||| Sbjct 2476646 AACCTCAAGGGTAATGGTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATG 2476697 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||| || | | ||||||||||||||| ||||| || |||| |||| Sbjct 2476707 AGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGC 2476766 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||||||||| || | ||| | ||| ||||| | ||||| | ||| Sbjct 2476767 CCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCC 2476826 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| | | ||| ||||| | || Sbjct 2476827 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTA 2476886 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||| | || || ||||||||| Sbjct 2476887 ATGGTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATG 2476925 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||| || | | ||||||||||||||| ||||| || |||| |||| Sbjct 2476935 AGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGC 2476994 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||||||||| || | ||| | ||| ||||| | ||||| | ||| Sbjct 2476995 CCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCC 2477054 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| | | ||| ||||| | || Sbjct 2477055 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTA 2477114 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||| | || || ||||||||| Sbjct 2477115 ATGGTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATG 2477153 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||| || | | ||||||||||||||| ||||| || |||| |||| Sbjct 2477163 AGGCGCAGCACGAGATGGAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAGGGGGCGC 2477222 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||||||||| || | ||| | ||| ||||| | ||||| | ||| Sbjct 2477223 CCGTCTTCCAGCTGCTTGCCGGCAAAGACCAGCCTCTGCTGGTCAGGGGGAATACCTTCC 2477282 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| | | ||| ||||| | || Sbjct 2477283 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACGGGGCTCAACCTCAAGGGTA 2477342 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||| | || || ||||||||| Sbjct 2477343 ATGGTCTTGCCAGTCAGAGTCGTCACAAAGATCTGCATG 2477381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462235862169200