Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq6224 385 3e-102 seq14620 87.8 1e-12 >seq6224 Length=1053 Score = 385 bits (426), Expect = 3e-102 Identities = 630/902 (70%), Gaps = 12/902 (1%) Strand=Plus/Minus Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 |||||| |||||||| ||||| | || ||| | |||||||| |||||||| ||||| Sbjct 896 GTTCATGCAGTTCCCGCTGAGCCAGGAGGAGGCATCGTTCCCCATCGCCTACTCCATGGT 837 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 |||| | || || || | ||||| ||||| ||||| || | |||||||||||||| Sbjct 836 CATCCACAACAAAATCGAGATGTTTGAGCGGCTCCTGCGGTCCCTCTATGCCCCTCAGAA 777 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 | | ||||| ||||||| || |||||||||| || ||| | ||||| || ||| Sbjct 776 CGTCTACTGCATCCACGTTGACAGCAAGTCCCCAGCCACCTTCCAGGAGGCCGTGCGGGC 717 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||| ||||||| ||||||||||| |||||||| ||| ||||| ||||| Sbjct 716 CATAGCAGCCTGCTTTCCCAATGTCTTTGTGGCCAGTCGCCTGGAAAACGTGGTCTATGC 657 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 ||||||||| | |||| || ||||| ||||| ||| | ||| |||| |||||| | | Sbjct 656 TTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCAT 597 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||| ||| | ||| | || || || || || || || |||||||| |||||||||||||| Sbjct 596 GCCGTGGCACTACGTCCTCAACACTTGTGGCACCGATTTCCCCATCAAGACCAATGCCGA 537 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 ||| |||| || || ||| || || |||| |||||| |||||||| ||| || || Sbjct 536 GATAGTCCGTGCGCTGAAGGTGCTGCAGGGACGGAACAGCATGGAGTCAGAGAAGCCCTC 477 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTAC 108154 | ||| | |||||| | |||| | | || ||| || | ||| Sbjct 476 GGCCCTCAAGCGGGAGCGCTGGCAGTACCACCACGAAGTG-GGGAAGTTCATCTCCCGGA 418 Query 108155 CAGCAAGA-TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 |||| | | ||| || || ||| | || | ||||||||||| || || || ||| Sbjct 417 CAGCCACAGAGAAACTGCCACCACCTCACAACTCTCCCATGTTCACGGGCAACGCGTATA 358 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGG 108273 |||||| | | || ||||||| || || |||| || ||||| | | | || | Sbjct 357 TTGTGGTCACACGGACCTTTGTACAGCACATCTTCGAGAACCCCACAGCGCAGCAGTTCC 298 Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCG 108331 | || |||| || |||||||| ||||||||||| ||| ||||||||||||| | || Sbjct 297 TCGAGTGGGCGAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCA 238 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCA---CCCCAAGTATCACATCTCAGACAT 108388 ||| | ||| |||| || | | || ||| ||||| || || ||||| Sbjct 237 TGCCCGGTG--TGCCGGGGGCCATGCC---CCAGAGTGACAAGTTCCAGCAGTCGGACAT 183 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 || ||| | || | || || ||||||||||||| ||||| || ||||| ||| || Sbjct 182 GAACGCCCTGCCCCGCCTGGTGAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGC 123 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 ||| || |||||||| | || || | | | || ||||||| ||||||| || || Sbjct 122 GCCCTACCCACCCTGCACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGTGA 63 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGA 108568 | || |||| | |||||| | || ||||||||||| |||||||| ||||| ||| || Sbjct 62 CGTGCCCTGGCTGCTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCCAGGTCGA 3 Query 108569 TG 108570 || Sbjct 2 TG 1 >seq14620 Length=23486 Score = 87.8 bits (96), Expect = 1e-12 Identities = 215/324 (66%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 107709 GACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTG 107768 || || || ||||| || || || ||||| || | || ||||| | |||| | || Sbjct 10979 GAATTTCCAATTGCTTATTCAATAGTGGTTTATCACAAAATTGAGATGCTTGATAGACTT 11038 Query 107769 CTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCA 107828 || || | | |||||||||||||| | ||||| | || || || ||||| ||| Sbjct 11039 CTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATTCATGTTGACAAAAAGTCTCCA 11098 Query 107829 GAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCC 107888 || |||| | ||||| |||| || | || || || |||||||| || || Sbjct 11099 GAATCTTTTTTTGCTGCGGTGAAGGGAATAGTCTCATGTTTTGATAATGTCTTTATTTCC 11158 Query 107889 AGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGT 107948 || |||| | || || ||||| || ||| ||| ||||| || ||| | ||||| Sbjct 11159 AGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGGGTGCAGGCAGACATTAACTGC 11218 Query 107949 ATGGAAGACTTGCTCCAG----AGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGG 108004 ||| ||||| | || ||| |||||| ||||| ||| || | || || || Sbjct 11219 ATGAAAGACCT-CTACAGAAGAAGCTCA---AACTGGAAATACCTAATAAACCTCTGTGG 11274 Query 108005 GACAGACTTCCCCATAAAGACCAA 108028 | |||||||| ||||||||||| Sbjct 11275 CATGGACTTCCCTATAAAGACCAA 11298 Score = 87.8 bits (96), Expect = 1e-12 Identities = 195/289 (67%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 ||||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 11546 GTTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAG- 11604 Query 108333 GCTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACAT 108388 | ||| || | | || || | ||| || || || ||||| || | || ||||| Sbjct 11605 GATCCCTGAAGTCCCAGGTGCAGTTTCTTCTAGTGAC---AAGTACGACGTTTCTGACAT 11661 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 || || | |||||| | ||||||||||||||| || || || || || || || Sbjct 11662 GAACGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAAGGTGC 11721 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 || || |||| ||| ||| | || | | |||| ||| |||| || || Sbjct 11722 ACCCTACCCACCATGCAGCGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGGGTGGGAGA 11781 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||| |||||| || | ||||| ||||| || || || ||||||||| Sbjct 11782 CCTGAGCTGGATGCTGCGAAACCACCACCTGTTTGCTAATAAGTTTGAC 11830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348002672464326