Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq19787 168 2e-36 seq48153 161 2e-34 seq32563 113 1e-19 seq28635 107 4e-18 seq48369 86.0 1e-11 >seq19787 Length=16101 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 14551 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 14610 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 | | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 14611 TTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 14670 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 14671 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 14713 >seq48153 Length=1917 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || |||||||| || ||||||||||| ||||| ||||| || || || | || ||| Sbjct 1430 AGCACGAGATGTAAGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 1489 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || |||||||| ||||| ||||| || ||||| || ||| Sbjct 1490 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 1549 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| || || || || ||||| || || || ||| Sbjct 1550 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1609 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| |||||||| Sbjct 1610 TTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1641 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || |||||||| || ||||||||||| ||||| ||||| || || || | || ||| Sbjct 1658 AGCACGAGATGTAAGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 1717 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || |||||||| ||||| ||||| || ||||| || ||| Sbjct 1718 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 1777 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| || || || || ||||| || || || ||| Sbjct 1778 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1837 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| |||||||| Sbjct 1838 TTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1869 >seq32563 Length=19397 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 10164 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 10223 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 10224 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 10283 Query 269258 GA 269259 || Sbjct 10284 GA 10285 >seq28635 Length=94282 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | || |||||||| || || ||||| || |||||||| ||||||||||| Sbjct 91243 GGAGAACGCGTTGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCA 91184 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 91183 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTC 91124 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 91123 ATCAGCAGAGATGA 91110 >seq48369 Length=30469 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 238599 TCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGG 238658 ||| ||||| | |||||||| | ||||| ||||| | ||| | || ||||| ||| Sbjct 27920 TCCCCCCAGCTCCAAATGGTCCGGGAGGGCAAGATGCACGGCTTCCTGCGGATGTACTGG 27861 Query 238659 GCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTTAT 238718 || || ||||| || || ||||| | ||||| |||| || || | | | || || Sbjct 27860 GCCAAGAAGATCCTGGAGTGGACCCGCTCTCCCGAGGAGGCCCTGCGGTTTGCCATCTAC 27801 Query 238719 CTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768 || ||||| ||||| || ||||| | ||| || |||||||||||||| Sbjct 27800 CTCAACGACCGCTACGAGCTGGACGGGAGGGACCCCAACGGATACGTAGG 27751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150473446043892