Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq21154 143 4e-29 seq61966 118 2e-21 >seq21154 Length=17606 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||||| || ||||| || || ||| ||| |||||||| || ||||||| Sbjct 1581 ATGAGTCTAGTGGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1522 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || || || | ||||||||||| ||||| || ||||| |||||||| | || || Sbjct 1521 ACGTCACAGACCCGATTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 1462 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || || | | ||| | ||| || || | ||||| Sbjct 1461 ACCAAACCAAACACCTCCTGCCCAACTGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 1402 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| |||||||| ||| Sbjct 1401 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATC 1342 Query 9862 TG 9863 || Sbjct 1341 TG 1340 Score = 141 bits (156), Expect = 1e-28 Identities = 210/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || || || ||| | |||| || ||| | | ||| Sbjct 3570 GGAAAGCAGTGAAAGGACAGCCCTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 3511 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | ||||| || |||| |||| | ||| || |||||||| || |||||||| |||||| Sbjct 3510 TATTGACTATTTCAAAGCCCAGCTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCCGGGG 3451 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || || || | || ||||| || || | ||| | || Sbjct 3450 AGCAGATAGCATTGCCCATCAGTCCCTTCAAAGAGAACGGTGCTCCAATCTCCACCATTG 3391 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| ||||| || || || |||||||| || | || || | |||| ||||| Sbjct 3390 TTTCACCAAAGATTGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 3331 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| || |||||||| ||||| || ||||| || || ||||| ||||||||||| Sbjct 3330 TAGCATCAATGTCTCCATAAAGCTCCTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGT 3273 >seq61966 Length=1849 Score = 118 bits (130), Expect = 2e-21 Identities = 197/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 |||| ||| || |||||| || || || || || | ||| |||| || ||| Sbjct 642 ACGGGCACTTCTTCACGTTGAGGCAAACGAGTTTCTTGAGGGATGCTGTCTTCACTATCT 583 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || |||| || || || |||||||||||||| | |||||||||||| || Sbjct 582 CAAAACCAGTTGCTCCACCAAACGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGT 523 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | | | || || || |||||||||||||| || | ||| | ||||| || || || | Sbjct 522 TTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCTCCAAAAA 463 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 | | ||||| |||| || || | || || || | || ||||||| ||| || |||| Sbjct 462 TACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCAGGATAAAACTCCAGAGCATCAATGT 403 Query 8931 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||||| || || || || || || | |||| ||||||| Sbjct 402 CTCCGTACAGCTCCTCCAGCTCAGCCGCCTTCTCCTCCTCTCCTG 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707969502544560