Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19735 123 4e-24 seq34806 118 2e-22 seq47255 104 4e-18 >seq19735 Length=10849 Score = 123 bits (136), Expect = 4e-24 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 8924 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8983 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 8984 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 9043 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 9044 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 9103 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||||| || | ||||| ||||| ||||||| Sbjct 9104 GCACGCCAAGAGGAAGACGGTCACGGCCATGGA 9136 >seq34806 Length=1866 Score = 118 bits (130), Expect = 2e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| || |||||||| || || || Sbjct 137 CGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGCGGC 196 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || | |||| || |||| || | || ||||| ||||||| Sbjct 197 GTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACGCGCGGCGTGCTGAAGGTCTTCCTG 256 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||||| Sbjct 257 GAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTCACG 316 Query 16637 TCCATGGA 16644 ||||||| Sbjct 317 GCCATGGA 324 >seq47255 Length=1104 Score = 104 bits (114), Expect = 4e-18 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 ||||||||||| || ||||| || |||||||| || || || || ||||| |||| || Sbjct 227 ATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGG 286 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 | |||| || |||| || | || ||||| ||||||| ||| ||| |||| || Sbjct 287 CTCATCTACGAGGAGACGCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTCATCCGCGAC 346 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 || || ||| ||||||||||| || | ||||| ||||| ||||||| Sbjct 347 GCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTCACGGCCATGGA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79017873865407