Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq60581 111 3e-19 seq14636 102 2e-16 seq32563 93.3 8e-14 seq12701 84.2 4e-11 >seq60581 Length=975 Score = 111 bits (122), Expect = 3e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || ||| |||||||| || ||||||||| || ||| || || | || ||| || Sbjct 86 CACCCCTTTGCTGACAGGAGAGCCCTCGTACGTTTCGTACGGCCCTTGCTCCTTGGCAAG 145 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 || ||||| | || | ||| |||| || ||||||||||| ||| || ||| | | Sbjct 146 CTCGCAGCTGGCTTCCAACGCGCCGTAATAAATGGTCTCGAAAATCTGCTGGTTGAGGAG 205 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | |||| | || ||||||| | ||||| |||||| |||| ||||| ||||| Sbjct 206 CTGCGCCTCGGGGCTCTCGAAGGGGTACCTCATCAGGATGAAGGCGTCTGCCAGCCCCTG 265 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 ||| |||||||||||||| | ||| || |||||||||| Sbjct 266 CACCCCGATGCCGATGGGACGGTGGCGTCTGTTGGAGCG 304 >seq14636 Length=6855 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| ||||| ||||||||||| ||| |||||||||| | ||| || || Sbjct 2884 CTTCATGAAGAGATCGGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCGCGCTGTTCTTC 2943 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | || ||||||||| ||| |||| || || |||| ||| | ||||| ||||||| Sbjct 2944 CTTCCCGGTGTTCTTCTTCAAGTCCAGGAACTCGAAGATGTCCAAATGCCACGGCTCCAG 3003 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||||| |||| || ||||| Sbjct 3004 GTAGATGGCGAAAGCCCCGGG 3024 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| | | ||||||| || ||||| || || | || ||||| ||||||||| Sbjct 1134 ACCTCATCCTTGCTCGTGTACTCCACGATCTCCGTACACAAATTGCTGCATTTGATGGTG 1193 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| ||| |||||| ||| |||||||| ||| ||||| |||||| | ||| Sbjct 1194 CCCAGGTTCTGCTGATTGCTCTTCCGGTTGCAGGAGTCTTTGTACAGCATGTACGGCGTG 1253 Query 244826 CCGGTCTCGAGCTGGG 244841 |||||||| ||||| Sbjct 1254 CCGGTCTCCGTCTGGG 1269 >seq32563 Length=19397 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 10152 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 10211 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 10212 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 10271 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 10272 ATTAGCAGAGATGAGG 10287 >seq12701 Length=3095 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 |||||||||||| || || || || | |||| ||||| ||| ||| || |||||||| Sbjct 1302 CACCTGAAACTCCCCGGAGAGGACCCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCGAT 1243 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | || |||||||||| ||||| || || || || |||||||| || | || || Sbjct 1242 GGATTCGTTGTTGCCCAGGATCTGAGCGGTAGAGGCGGTTGGCATGGGAGAGAGGAGAAG 1183 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 ||||| || || |||| ||| Sbjct 1182 GCTGTTTCTGACACCGTACCT 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943599085956240