Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq21154 158 2e-33 seq61966 116 5e-21 seq41826 96.9 5e-15 seq15829 96.9 5e-15 seq15966 89.7 7e-13 >seq21154 Length=17606 Score = 158 bits (174), Expect = 2e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||||||||| |||| |||||| ||| |||| || || || || ||||| || Sbjct 1581 ATGAGTCTAGTGGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1522 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || || ||||||| |||||||| ||||||||||| || || |||||||| || || || Sbjct 1521 ACGTCACAGACCCGATTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 1462 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| |||| ||| ||| | || || || | || | Sbjct 1461 ACCAAACCAAACACCTCCTGCCCAACTGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 1402 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| |||||||| | | Sbjct 1401 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATC 1342 Query 9967 TG 9968 || Sbjct 1341 TG 1340 Score = 138 bits (152), Expect = 2e-27 Identities = 208/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| |||||||||||| || ||||| ||| | || || | Sbjct 3570 GGAAAGCAGTGAAAGGACAGCCCTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 3511 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || || || || || || | | || || |||||||| || ||||||||| |||||| Sbjct 3510 TATTGACTATTTCAAAGCCCAGCTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCCGGGG 3451 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || || ||||| || ||||| || || | ||| | || Sbjct 3450 AGCAGATAGCATTGCCCATCAGTCCCTTCAAAGAGAACGGTGCTCCAATCTCCACCATTG 3391 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||| ||||| || || || ||||| || | || ||| | || || || | Sbjct 3390 TTTCACCAAAGATTGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 3331 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || | |||| || || || || || || || ||| Sbjct 3330 TAGCATCAATGTCTCCATAAAGCTCCTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 3275 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | || || | | || |||| | || | ||| | ||| Sbjct 2778 GATGGAGTTGTTGTAGAGAAACTGCTGGAAAGTGTACTCCTGGTTGTGTATCTGGAAAGT 2719 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| || | |||||| ||||||| |||||||| ||||| || ||||||||||| Sbjct 2718 GTCAGGCAGAAGCGGGTGCCAGTGGTAGAGAGTATTGAATTCGGCTGCAATTCGGTTCTG 2659 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| || ||| |||||| | ||| || ||||| | || | ||||||||| Sbjct 2658 GTACTGGAATCTCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAG 2601 Query 9670 CCGCTGAGTTGCTGGACATA 9689 || || | || || ||||| Sbjct 2600 CCACTCAAATGTTGTACATA 2581 >seq61966 Length=1849 Score = 116 bits (128), Expect = 5e-21 Identities = 192/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||| ||| |||| ||| || | || ||| || ||||| || || ||||| Sbjct 632 CTTCACGTTGAGGCAAACGAGTTTCTTGAGGGATGCTGTCTTCACTATCTCAAAACCAGT 573 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 | || || || || ||||||||||||||| | |||||||||||| ||| | | || Sbjct 572 TGCTCCACCAAACGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAG 513 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 ||| |||| |||||||||||| || | ||| | ||||| || || || || || ||| Sbjct 512 CCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCTCCAAAAATACCATTGGG 453 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||||| || | || | ||| || | ||| || || || Sbjct 452 TTGGGGTTTCTCAAGCAGCAAGCCAGGATAAAACTCCAGAGCATCAATGTCTCCGTACAG 393 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 | |||| ||| || || |||||| ||| ||| || Sbjct 392 CTCCTCCAGCTCAGCCGCCTTCTCCTCCTCTCCTGCA 356 >seq41826 Length=1493 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||| || || | || || ||||||||| | || ||||| || |||| || Sbjct 431 TCACCTTTAACACCCATTGGTGTCGGGCAGTCAAGTCCCACTGGAGGAAGGCTTCTTGTG 372 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||| | ||||||||||| ||||||| |||||| |||||| Sbjct 371 TAATAGGAAAGATTTGAATAAGCTTCCCAGCTTTTGTAGCTATAATCGCTGTTGTAAGTT 312 Query 10507 GGGGGACTGTCAATCA 10522 || || |||||||||| Sbjct 311 GGTGGGCTGTCAATCA 296 >seq15829 Length=740 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||| || || | || || ||||||||| | || ||||| || |||| || Sbjct 310 TCACCTTTAACACCCATTGGTGTCGGGCAGTCAAGTCCCACTGGAGGAAGGCTTCTTGTG 369 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||| | ||||||||||| ||||||| |||||| |||||| Sbjct 370 TAATAGGAAAGATTTGAATAAGCTTCCCAGCTTTTGTAGCTATAATCGCTGTTGTAAGTT 429 Query 10507 GGGGGACTGTCAATCA 10522 || || |||||||||| Sbjct 430 GGTGGGCTGTCAATCA 445 >seq15966 Length=5310 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627 |||||| | ||||| ||||||||| | || || || ||| ||||||| || || Sbjct 4331 TGCCAGTGATAGAGCTGATTGAACTCCACGGCGATGCGATTCCGGTACTGGAACTGCGTC 4272 Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687 || ||||| | ||| ||||| || | || || | |||||||||||| ||||||||| Sbjct 4271 CCAAACAGCAGCTCGGGGTCGAACTTGAGGCTGAGGAAGTACCCGCTGAGGTGCTGGACA 4212 Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || | | ||| | ||| |||||||| ||||| Sbjct 4211 TAGTCTTCGATGACAATCTTAATGGTCTCCCC 4180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723160787226600