Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq48153 136 9e-27 seq17645 84.2 5e-11 >seq48153 Length=1917 Score = 136 bits (150), Expect = 9e-27 Identities = 151/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| || |||||||| |||| || || | |||||||| |||||||| || Sbjct 1445 GTGGATTCTTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCA 1504 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || | || || ||||||||||||||||| ||||| || || || |||| Sbjct 1505 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1564 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 ||||||||||||||||| ||| ||||| || ||||| | ||||| || |||| Sbjct 1565 ACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGG 1621 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 1622 GTCTTGACAAAGATCTGCAT 1641 Score = 136 bits (150), Expect = 9e-27 Identities = 151/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| || |||||||| |||| || || | |||||||| |||||||| || Sbjct 1673 GTGGATTCTTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCA 1732 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || | || || ||||||||||||||||| ||||| || || || |||| Sbjct 1733 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1792 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 ||||||||||||||||| ||| ||||| || ||||| | ||||| || |||| Sbjct 1793 ACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGG 1849 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 1850 GTCTTGACAAAGATCTGCAT 1869 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| || | || || | |||||||| ||||| Sbjct 1210 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTG 1269 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || | || || || || || ||||| || || || || || || Sbjct 1270 CTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGGATCTT 1329 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||||||||||||||||||| ||| ||||| || ||||| | ||||| || Sbjct 1330 GGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTGCC 1386 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 1387 CGTCAGGGTCTTGACAAAGATCTGCAT 1413 >seq17645 Length=3944 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||| ||||| |||| || || | |||||||| |||||||| || ||||| | Sbjct 417 CTTTTTGAATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAAA 358 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || || || |||||||||||| Sbjct 357 TCAGTCGCTGCTGATCAGGAGGAATGCCT 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108590319106133