Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq28898 297 3e-75 seq48153 167 3e-36 seq19570 116 5e-21 seq17645 89.7 7e-13 >seq28898 Length=2938 Score = 297 bits (328), Expect = 3e-75 Identities = 1022/1577 (65%), Gaps = 35/1577 (2%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| || || || || ||||| || || || || | || ||| || ||| Sbjct 559 GGCATCGACTTGGGCACCACGTACTCCTGCGTGGGCGTCTTCCAGCATGGCAAAGTGGAG 618 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | |||||||| || ||||| || || || || || || || || |||| Sbjct 619 ATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCTTTCACCGATACA 678 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || || ||| | || || || || || || ||| || |||||||| | ||| || || Sbjct 679 GAGCGCCTCATCGGTGACGCTGCCAAGAACCAGGTGGCGATGAACCCCACCAACACCATC 738 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || || || |||||||| || || ||||||| | || | || || || | Sbjct 739 TTCGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCTGACGTG 798 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||||| | | || || || | ||||| ||||| | | | | || || Sbjct 799 AAGCACTGGCCCTTCCGCGTGGTGAACGAGGGTGGC----AAGCCCAAGGTACAAGTGGA 854 Query 195604 ATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | | ||||||| ||| || | | | ||||| || || || ||||| | | | Sbjct 855 GTACAAGGGTGAGATGAAGACCTTCTTC-CCCGAGGAGATCAGCTCCATGGTCCTTACCA 913 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 | |||||||||| ||| || | | |||| | ||| | |||| || | || | Sbjct 914 AAATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCATCACAG 973 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | ||||||||||||| ||| || || || ||||| || || ||||||| | || | | Sbjct 974 TGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGACGCTGGCACCATCACTG 1033 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 | || ||| | | |||||||| || || || || ||||| || || ||||| ||| Sbjct 1034 GCCTTAACGTGATGCGTATTATCAACGAGCCCACGGCAGCTGCGATAGCCTATGGCTTGG 1093 Query 195843 ACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 ||||||| | || | ||| || ||||| | |||||||| | || || || | Sbjct 1094 ACAAGAAAGGTACCCGGGCGGGAGAGAAGAATGTGCTCATCTTTGACTTGGGAGGGGGCA 1153 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | |||||||| || | || | ||||| | ||| || || || || ||| | || |||| Sbjct 1154 CTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCACAGCTG 1213 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATG 196016 |||| || || || ||||| || || || || || | | ||||| || | Sbjct 1214 GTGACACCCACCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGGAAG 1273 Query 196017 AGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 | ||| || ||| | ||| || || | || || | || | | || || Sbjct 1274 AATTCAAGCGTAAGCACAAGCGTGACATCGCCGGCAACAAGCGAGCGGTGAGGCGACTGC 1333 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACGGCTCAAACAATGGTTG 196133 | || || || || | || || || |||||| ||||| ||| ||| | | ||| Sbjct 1334 GTACGGCTTGCGAGAGGGCGAAGCGCACTCTCAGCTCTTCCACG---CAAGCTAGCATTG 1390 Query 196134 AGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTG 196193 |||| || || | | || || ||||||||||| || ||||||| ||||| || || | Sbjct 1391 AGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCTATTACTCGTGCCCGCTTCG 1450 Query 196194 AAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTG 196253 | ||| | || ||||| | || | |||| || || || | | || |||| Sbjct 1451 AGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCTCTGCGTG 1510 Query 196254 ACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTA 196313 | || ||| | || ||| || | | || || || || ||||| || || ||||||| Sbjct 1511 ATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCCACCCGTA 1570 Query 196314 TTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGA 196373 | || ||||| ||| || |||| |||||||||| || || | ||||| | | Sbjct 1571 TCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAGGAGCTCAACAAGAGCA 1630 Query 196374 TCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTG 196433 ||||||| ||||| || |||||||| ||||| ||||| || || ||||| |||| | | Sbjct 1631 TCAACCCCGATGAGGCTGTTGCTTACGGTGCTGCCGTCCAAGCAGCTAT--CCTCATG-G 1687 Query 196434 TTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGG 196490 ||||| | ||||| || ||||| ||||| | |||||| | || | ||||||| Sbjct 1688 GAGACAAGTCCGAGAACGTGCAGGATCTGCTGCTCTTAGATGTTACCCCTCTGTCCCTGG 1747 Query 196491 GTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGA 196550 | | || || || ||||| || |||||| | || | | ||||| || ||||| | Sbjct 1748 GCATCGAGACGGCCGGTGGAGTGATGACTGCTCTCATCAAGCGCAACACCACCATTCCCA 1807 Query 196551 CTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATATTCAA 196609 | || | || ||| | || || ||||| || || | || | || | | || Sbjct 1808 CCAAACAAACCCAGACCTTCACCACCTACTCCGACAACCAGAGCA-GCGTCCTGGTCCAG 1866 Query 196610 GTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGAT 196666 || || || | |||| ||| || | ||||| ||| | | || || | || || Sbjct 1867 GTGTACGAGGGTGAGAGGGCT---ATGACGAAGGACAACAACTTGCTGGGCAAGTTTGAC 1923 Query 196667 TTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATA 196726 | || || || || | |||||| | || || || ||||| | || ||| || || Sbjct 1924 CTAACTGGCATCCCCCCAGCACCCCGTGGGGTCCCCCAGATCGAGGTCACCTTTGACATC 1983 Query 196727 GACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA-AA 196785 || || ||||| || || ||||||| |||| |||||| | || ||| ||| || Sbjct 1984 GATGCCAATGGTATCCTTAACGTCAGCGCTGTAGACAAGAGCACAGG-AAAGGAGAACAA 2042 Query 196786 GATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCA 196845 ||| || ||||| |||||||| || || ||||| || || || || ||||| || Sbjct 2043 GATCACCATCACCAACGACAAGGGTCGCCTGAGCAAGGATGACATCGACCGCATGGTGCA 2102 Query 196846 AGATGCGGAAAAGTACA 196862 ||| || || ||||||| Sbjct 2103 AGAAGCAGAGAAGTACA 2119 >seq48153 Length=1917 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || |||||||| ||||| ||| | Sbjct 1641 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1582 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || || |||||||||||||| || |||||| Sbjct 1581 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 1522 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| ||||||||| | || ||||| Sbjct 1521 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 1462 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || |||| || || || | || || ||||| Sbjct 1461 ATCCAGAAAGAATCCACCTTACATCTCGTGCTGCGCCTGCGTGGTGG 1415 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || |||||||| ||||| ||| | Sbjct 1869 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1810 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || || |||||||||||||| || |||||| Sbjct 1809 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 1750 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| ||||||||| | || ||||| Sbjct 1749 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 1690 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || |||| || || || | || || ||||| Sbjct 1689 ATCCAGAAAGAATCCACCTTACATCTCGTGCTGCGCCTGCGTGGTGG 1643 >seq19570 Length=26784 Score = 116 bits (128), Expect = 5e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| ||| || || || ||||| |||||||| | Sbjct 1278 ATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCCCAGCGTCAGGCAACAAAGGATG 1337 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | |||||||| || || ||| || |||| |||||||| || ||||| ||||| Sbjct 1338 CTGGAACCATTGCGGGGCTCAA-TGTGCTGCGAATCATCAATGAGCCGACAGCTGCTGCC 1396 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || || |||||||||||||| || Sbjct 1397 ATAGCCTATGGTCTGGACAAAAA 1419 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 ||||||||||||||||| | || || | ||||| ||| | | || || | || || | Sbjct 2897 GTATATGAAGGAGAACG-TGCCATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 2955 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 |||||| ||||| |||| |||||||| || || ||||| | || |||||| || || Sbjct 2956 GACGGGCATTCCCCCTGCTCCCAGAGGCGTACCTCAGATCGAAGTAACCTTCGACATTGA 3015 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || ||||| | |||| ||||||| ||||||| | ||||| Sbjct 3016 TGCCAATGGCATCCTGAACGTGTCTGCTGTGGACAAGAGCACTGGCAAGGAGAACAAGAT 3075 Query 196789 TGTGATTACCAATGACAAGGG 196809 ||| ||||| |||||||| Sbjct 3076 CACGATAACCAACGACAAGGG 3096 >seq17645 Length=3944 Score = 89.7 bits (98), Expect = 7e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 329 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACG 388 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || | || |||||| ||||||| Sbjct 389 CACGCTGTCCGACTACAACATTCAAAA 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657346808567280