Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq14620 165 9e-36 seq6224 114 1e-20 >seq14620 Length=23486 Score = 165 bits (182), Expect = 9e-36 Identities = 573/887 (65%), Gaps = 29/887 (3%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || || |||||||| || ||| || ||||| | || || ||| Sbjct 11829 TCAAACTTATTAGCAAACAGGTGGTG---GTTTCGCAGCATCCAGCTCAGGTCTCCCACC 11773 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || ||||| || |||||||| || || || | || || | | Sbjct 11772 CCAAAAACACAGACAGAGCGAACGTGAACTCCGCTGCATGGTGGGTAGGGTGCACCTTTG 11713 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||| || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 11712 GACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCGTTCATGTCAGAA 11653 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||||||||||| |||| || | || || || || || | || | ||||| | || Sbjct 11652 ACGTCGTACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATCCTCTGAATTGT 11594 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA- 162418 |||||||||| || ||||| || || || || || | |||||| | |||| | Sbjct 11593 TGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAACAAACTGGAGTAT 11534 Query 162419 ----CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCG 162474 | | ||| | || | | | || | || |||| | || | ||| || || Sbjct 11533 TTTGCTGCTTTCTAATACATATTCTACAAACCG-----CCTGCTAACTACAAAATAGGCA 11479 Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 ||||||||||| | || | | | ||| || | | ||||||| || ||||| | Sbjct 11478 CTACCAGAAAAAATCGGAGTACTGAGAGGCGGTAGTTTTTTGTCTATGCCTGTGTTCTTT 11419 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 | | || || | ||| | || ||| ||||||| | ||| || ||||| Sbjct 11418 ATTTTACCATCAATAACCTCATGGTGCTTTTTCCACCTTACTTCTTTA----TAAACGGG 11363 Query 162595 ----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTC 162650 | ||| || || | ||||| ||| | ||| || | | || || || Sbjct 11362 CATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTC 11303 Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710 | |||||||| | || ||||| |||| ||||| || || | |||||||| || Sbjct 11302 CTGGTTGGTCTTTATAGGGAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGA 11243 Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770 ||| || ||| || || | | ||||| | || ||||| || | ||||| || || Sbjct 11242 GCTTCTTCTGTAGAGGTCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGC 11183 Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830 || || || ||||| ||| ||| | ||||||||| || ||||| || ||||| || Sbjct 11182 ATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCC 11123 Query 162831 CATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAG 162887 | |||| || || | || | || || ||| | || || || | |||||| | Sbjct 11122 CTTCACCGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATGCAGTAAAA 11066 Query 162888 ATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTAC 162947 |||||||||||| ||||| | || || | ||| || | |||||| || || || | || Sbjct 11065 ATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAAC 11006 Query 162948 CACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 ||| || ||||| || || || || || || || || | ||||||| Sbjct 11005 CACTATTGAATAAGCAATTGGAAATTCCGCTTCTTCATGGCTGAGAG 10959 >seq6224 Length=1053 Score = 114 bits (126), Expect = 1e-20 Identities = 252/375 (67%), Gaps = 2/375 (1%) Strand=Plus/Plus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669 ||||| || ||| || |||||||| ||| || ||||| ||||||||| | ||| Sbjct 498 CTGTTCCGTCCCTGCAGCACCTTCAGCGCACGGACTATCTCGGCATTGGTCTTGATGGGG 557 Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATC 162728 || |||||||| || || | || || | |||| | | | || | | ||| || Sbjct 558 AAATCGGTGCCACAAGTGTTGAGGACGTAGTGCCACGGCATGGGGC-TCTGCAGCAGGTC 616 Query 162729 CTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAA 162788 ||| | ||||| || |||||||| | || ||| || || || || ||| | |||| Sbjct 617 CTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAAGCATAGACCACGTTTTCCAG 676 Query 162789 CCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA 162848 | | |||| |||||||||||| || || | |||| || ||||||| ||| Sbjct 677 GCGACTGGCCACAAAGACATTGGGAAAGCAGGCTGCTATGGCCCGCACGGCCTCCTGGAA 736 Query 162849 CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGC 162908 | | | || || || ||||| | |||||| | ||||||||||| |||| || Sbjct 737 GGTGGCTGGGGACTTGCTGTCAACGTGGATGCAGTAGACGTTCTGAGGGGCATAGAGGGA 796 Query 162909 CCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGG 162968 || ||| | | ||| |||||||| || || | ||| | || || || || || ||||| Sbjct 797 CCGCAGGAGCCGCTCAAACATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGATGGG 856 Query 162969 GAACTCAGCCTCCTC 162983 |||| |||||||| Sbjct 857 GAACGATGCCTCCTC 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577978661150400