Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq49365 98.7 8e-16 seq28635 86.0 5e-12 >seq49365 Length=32034 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || |||||||| ||| || | |||| ||| Sbjct 26266 TGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTTTATGTTCTAAAGGATGAATTGT 26207 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 26206 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATCGCCA 26147 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 26146 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 26110 >seq28635 Length=94282 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 |||| || || ||||| ||||| || || ||||| || || ||||| ||||| ||||||| Sbjct 93301 CAGAGGCTCGTTGTTTCTATGGCTTCCAGATTGCTATGGAGAATATACATTCAGAAATGT 93242 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||||| || || || ||||| || ||| Sbjct 93241 ACAGTCTTCTTATTGACACCTACATTAAGGAT 93210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397152286357495