Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq28898 163 9e-35 seq48153 132 1e-25 seq19570 129 2e-24 seq31541 84.2 7e-11 >seq28898 Length=2938 Score = 163 bits (180), Expect = 9e-35 Identities = 568/877 (65%), Gaps = 16/877 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||||||| |||||||| || ||| | || | || ||||||| || || Sbjct 913 AAAATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCATCACA 972 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || ||||| ||||||| || || ||||| ||||||| ||| | Sbjct 973 GTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGACGCTGGCACCATCACT 1032 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || | | || || || || ||||| || || || || || ||||| | Sbjct 1033 GGCCTTAACGTGATGCGTATTATCAACGAGCCCACGGCAGCTGCGATAGCCTATGGCTTG 1092 Query 349742 GATAAAATGAGTGACCA------AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || | || || ||| || ||| | || || ||||| || || || || Sbjct 1093 GACAAGAAAGGTACCCGGGCGGGAGAGAAGAATGTGCTCATCTTTGACTTGGGAGGGGGC 1152 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||||||||| || | || || |||| || || || ||||| || || | || ||| Sbjct 1153 ACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCACAGCT 1212 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || || ||||| || || ||||| || || | || |||||||| || Sbjct 1213 GGTGACACCCACCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGGAA 1272 Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCT 349974 ||||| |||||| |||| || ||| || | | || |||| || | || || Sbjct 1273 GAATTCAAGCGT-AAGCACAAGCGTGACATCGCCGGCAACAAGCGAGCGGTGAGGCGACT 1331 Query 349975 AAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACCTCTATTG 350033 | || || || || | || ||||| | || | | ||| | || ||| | |||| Sbjct 1332 GCGTACGGCTTGCGAGAGGGCGAAGCGCACTCTCAGC-TCTTCCACGCAAGCTAGCATTG 1390 Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093 | || || || || || |||| || |||| | |||||||| ||||| || || | Sbjct 1391 AGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCTATTACTCGTGCCCGCTTCG 1450 Query 350094 AAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAG 350153 | || | | ||||| || | | || |||| || ||||| || | | | Sbjct 1451 AGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCTCTGCGTG 1510 Query 350154 ATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTA 350213 |||| || | ||| ||||| | || | || | || ||||| || || |||| Sbjct 1511 ATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCCACCCGTA 1570 Query 350214 TTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCA 350272 | || || | ||| || | ||| || || || |||||||| || | | | ||| | Sbjct 1571 TCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAGGAGCTCAACAAGAGC- 1629 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGA 350332 || || || ||||| |||||||| || |||||||| || || ||| |||| | ||| Sbjct 1630 ATCAACCCCGATGAGGCTGTTGCTTACGGTGCTGCCGTCCAAGCAGCTATCCTCATGGGA 1689 Query 350333 AATAAGAGTTCTAAAA--TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTG 350390 | | ||| | | || | | ||||| | || ||||||| || || || || || | Sbjct 1690 GACA--AGTCCGAGAACGTGCAGGATCTGCTGCTCTTAGATGTTACCCCTCTGTCCCTGG 1747 Query 350391 GATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 | | || || | |||| ||| ||||||| ||| || Sbjct 1748 GCATCGAGACGGCCGGTGGAGTGATGACTGCTCTCAT 1784 >seq48153 Length=1917 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || ||||| | || || ||||| || ||||| || || Sbjct 1411 CATCCCACCACGCAGGCGCAGCACGAGATGTAAGGTGGATTCTTTCTGGATATTGTAGTC 1470 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||||||||| || | |||||||| || Sbjct 1471 GGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 1530 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || || || || || ||||| | ||| || || Sbjct 1531 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTC 1590 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || ||||| |||||||| Sbjct 1591 CACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1641 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || ||||| | || || ||||| || ||||| || || Sbjct 1639 CATCCCACCACGCAGGCGCAGCACGAGATGTAAGGTGGATTCTTTCTGGATATTGTAGTC 1698 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||||||||| || | |||||||| || Sbjct 1699 GGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 1758 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || || || || || ||||| | ||| || || Sbjct 1759 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTC 1818 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || ||||| |||||||| Sbjct 1819 CACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1869 >seq19570 Length=26784 Score = 129 bits (142), Expect = 2e-24 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | ||||||||||||||||| ||||| |||||||| ||| Sbjct 1268 ACTGTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCCCAGCGTCAGGCA 1327 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 ||||| |||||||| | |||||||||| | ||||| || |||| || ||||| || || Sbjct 1328 ACAAAGGATGCTGGAACCATTGCGGGGCTCAATGTGCTGCGAATCATCAATGAGCCGACA 1387 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || ||||| || || |||| Sbjct 1388 GCTGCTGCCATAGCCTATGGTCTGGACAAAA 1418 Score = 118 bits (130), Expect = 3e-21 Identities = 361/550 (66%), Gaps = 26/550 (5%) Strand=Plus/Plus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | ||||| || || | || ||||| || |||||||| || | || || Sbjct 1533 GAAAGGAATGTCCTTATCTTCGACCTTGGAGGTGGCACCTTTGATGTGTCGATTCTGACT 1592 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || ||||| || ||| | || || ||||| || || | ||||||||| Sbjct 1593 ATTGAAGATGGCATCTTTGAGGTGAAATCCACCGCAGGTGACACTCACTTGGGTGGAGAA 1652 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATT 349939 || ||||| || || | || || || | || || ||||| ||||| || Sbjct 1653 GACTTTGACAACCGCATGGTCAACCACTTCATCGCCGAGTTCAAGCG-CAAGCACAA--- 1708 Query 349940 GATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCG--TGTGAACGTGCTA 349997 || ||| || | | ||| ||| |||||| || || || || || | Sbjct 1709 GAA---GGACATCAGCG-AGAACAA----------AAGAACACCGCCTGCGAGCGAGCAA 1754 Query 349998 AGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCA 350057 ||||| | | || || | ||| || || ||| |||||||| ||||| ||| || | Sbjct 1755 AGCGTACTCTGTCGTCCAGTACGCAGGCCAGTATCGAAATTGACTCTCTCTATGAGGGTA 1814 Query 350058 AAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTT 350115 || |||| | || || || | ||||| || ||||| | | ||| || || || Sbjct 1815 TTGACTTCTACACCTCCATCACCAGAGCTCGCTTCGAAGAGCT--GAATGCCGACCTCTT 1872 Query 350116 TAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCA 350175 | | || |||||||||||||||| | | ||||| ||| | |||| || Sbjct 1873 CCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCCAAACTCGACAAATCGCA 1932 Query 350176 GATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACT 350235 ||| | || | || | |||||||| ||||| ||||| ||||| |||| | | || Sbjct 1933 GATCCACGATATCGTGCTGGTTGGTGGGTCTACTCGTATCCCAAAGATTCAGAAACTGCT 1992 Query 350236 ATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTG 350294 || || || ||||||||||| | | ||| | || ||||| ||||||||||| | Sbjct 1993 GCAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGG 2051 Query 350295 CATATGGTGC 350304 | |||||||| Sbjct 2052 CTTATGGTGC 2061 Score = 89.7 bits (98), Expect = 2e-12 Identities = 116/157 (74%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | |||| Sbjct 1008 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AACGATGCTGGCAGGCCAAAA 1064 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | ||||||| || ||||| || | ||| | ||| ||||| ||||||||||| || || Sbjct 1065 GTCCAGGTTGAGTACAAAGGCGAG-ACAAAGAGTTTCTACCCAGAAGAAATTTCTTCCAT 1123 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||| ||||||||| Sbjct 1124 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 1160 >seq31541 Length=5710 Score = 84.2 bits (92), Expect = 7e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| ||||||| |||||||| || ||||| || |||||| || |||||||||||| Sbjct 877 GCTGTGGTTACTGTGCCAGCCTACTTCAATGACGCTCAGCGTCAGGCTACAAAAGATGCT 936 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 || | |||||| ||| | ||||| | ||||| || || || || Sbjct 937 GGTACCATTGCTGGGCTGAATGTGATGAGAATTATCAACGAGCC 980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514037149262297