Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq41319 104 3e-17 seq14636 91.5 2e-13 seq32563 89.7 6e-13 seq12701 86.0 7e-12 seq42168 82.4 8e-11 >seq41319 Length=45080 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 21247 GTGAAAATATAACGAGGGCTGGCAGCATCCTTTCCACCATGAAGTCTGGTACCAAACTGA 21306 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||||||| ||| |||||||| ||||||||||||||| Sbjct 21307 CCAATAGGTTGTAGCAGATTAACGTTGTTGCTGCCAACAAAGTTCTGAGCCAAGTTGACA 21366 Query 117425 ATCGT 117429 || || Sbjct 21367 ATAGT 21371 >seq14636 Length=6855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| |||||| || |||||||||||| ||||| ||||||||||| ||||||||| Sbjct 5219 AGCTGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAGGGCATCTACGACACGCTCAAG 5160 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||| |||| |||||||||| | ||||| ||||| Sbjct 5159 CAGTGCGCCCTGATCTCCAAGTCTGCTGGTGGGATCGG 5122 >seq32563 Length=19397 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 10285 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10226 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 10225 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 10166 Query 74892 AC 74893 || Sbjct 10165 AC 10164 >seq12701 Length=3095 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| ||| | | || ||||||||||| || || ||||||||| ||||||||||||| | Sbjct 1182 CCTTCTCCTCTCTCCCATGCCAACCGCCTCTACCGCTCAGATCCTGGGCAACAACGAATC 1241 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 ||||||| ||||| | ||||||||| |||| || ||| | || |||||| Sbjct 1242 CATCGAGCCCTACACCAGTAACATCTACACGCGCAGGGTCCTCTCCGGGGAGTTT 1296 >seq42168 Length=18805 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | || || ||||| ||||| ||| |||||||| Sbjct 8696 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCGTGCAGCCTCGTGCCAAACTGA 8755 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || | |||||||||||| |||||| || ||||| || || || | | Sbjct 8756 CCGATGGGCTGAAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGCGCTAAGTTGATA 8815 Query 152149 ATCGT 152153 || || Sbjct 8816 ATAGT 8820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546787126300200