Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq49365 114 1e-20 >seq49365 Length=32034 Score = 114 bits (126), Expect = 1e-20 Identities = 127/168 (76%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 |||||| ||||| || || |||||||| ||||| || || ||||||||||| || || || Sbjct 26103 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCGATATTGAAAGG 26162 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || ||||| || || |||||||| ||||| || || || | | |||| | Sbjct 26163 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGA---CAATTCATCCTT 26219 Query 27327 T---ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 | || |||||||| || | ||| ||||||||||| | |||||| || Sbjct 26220 TAGAACATAAAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 26267 Score = 113 bits (124), Expect = 3e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| || |||||||| ||||| || || || |||||||| || Sbjct 29413 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAGATC 29472 Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || ||| |||| ||| ||| ||| |||| || || | || || || || | Sbjct 29473 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 29531 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || ||||| | ||||||||||||| ||||| || || Sbjct 29532 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGTATTTGTAGAACC 29580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369224843267069