Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq123 114 2e-20 seq12 111 2e-19 seq431 96.9 4e-15 >seq123 Length=3649919 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| |||| ||| || ||||| |||||||| ||||||| || | || | Sbjct 2429725 CCTCATCTCTACTGATTAGTTCATTTGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2429666 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2429665 TCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2429606 Query 24277 C 24277 | Sbjct 2429605 C 2429605 >seq12 Length=3827242 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | || | Sbjct 3384539 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTTTTCT 3384480 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 3384479 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3384420 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 3384419 CAACCACTCTCTCACC 3384404 >seq431 Length=331394 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||||||||| || || | ||| || ||||||| || || Sbjct 63774 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGC 63833 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| |||||| || || ||| | | ||||| ||||||| || Sbjct 63834 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATATCCAAATGCCATGG 63892 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 63893 CTCCAGGTAGATGGCAAAAGCCCCAGG 63919 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| | ||| || || || || || || || || | Sbjct 69830 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACCGCAATCCTTGCTGCCAGGA 69889 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| ||||| |||| || || | || || || |||| || | ||| || |||| Sbjct 69890 TAGCATAGTCCGGGTGTTTGGTGGTCAAGGTTGCGGCCGTTTCAGCAGCCAGTGTATCCA 69949 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| |||||||| || ||| | || | || || || |||||||| Sbjct 69950 GTTCCACCGTTGTGACACCACTGTACAGCCCCTGAATCACCTTCAT 69995 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 53366 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 53425 || |||||| || || || |||| || ||||| ||||||| || || || |||||| Sbjct 58827 CCTTTACTGACGGGAGAACCCTCATACGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCA 58886 Query 53426 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 53485 || || || || || ||||| ||||||||||| || || |||| || || | || Sbjct 58887 CAGCTGGCTTCCAAAGCACCATAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGG 58946 Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 53545 || || | || ||||| || || | | | ||| || || ||||| | || || ||| Sbjct 58947 GCCTCAGGACTTTCAAAAGGGTACCTCATCAAAATGAAAGCATCTGCCAGGCCCTGCACA 59006 Query 53546 CCAATACCGATAGGTCTATG 53565 ||||| || || || | ||| Sbjct 59007 CCAATGCCAATGGGACGATG 59026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593678087628240