Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05]
5,863 sequences; 1,174,811,715 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq123 114 2e-20
seq12 111 2e-19
seq431 96.9 4e-15
>seq123
Length=3649919
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| |||||||| |||| ||| || ||||| |||||||| ||||||| || | || |
Sbjct 2429725 CCTCATCTCTACTGATTAGTTCATTTGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2429666
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 2429665 TCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2429606
Query 24277 C 24277
|
Sbjct 2429605 C 2429605
>seq12
Length=3827242
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | || |
Sbjct 3384539 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTTTTCT 3384480
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 3384479 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3384420
Query 24277 CAATAAGTCTTTCTCC 24292
||| | ||| || ||
Sbjct 3384419 CAACCACTCTCTCACC 3384404
>seq431
Length=331394
Score = 96.9 bits (106), Expect = 4e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088
||||| ||||| ||||||||||||||||| || || | ||| || ||||||| || ||
Sbjct 63774 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGC 63833
Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147
|| || || || || ||||| |||||| || || ||| | | ||||| ||||||| ||
Sbjct 63834 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATATCCAAATGCCATGG 63892
Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174
|||| ||| |||| | | | |||||
Sbjct 63893 CTCCAGGTAGATGGCAAAAGCCCCAGG 63919
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| |||| ||| || ||||||||||| | ||| || || || || || || || || |
Sbjct 69830 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACCGCAATCCTTGCTGCCAGGA 69889
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
| ||||| ||||| |||| || || | || || || |||| || | ||| || ||||
Sbjct 69890 TAGCATAGTCCGGGTGTTTGGTGGTCAAGGTTGCGGCCGTTTCAGCAGCCAGTGTATCCA 69949
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| |||||||| || ||| | || | || || || ||||||||
Sbjct 69950 GTTCCACCGTTGTGACACCACTGTACAGCCCCTGAATCACCTTCAT 69995
Score = 86.0 bits (94), Expect = 7e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 53366 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 53425
|| |||||| || || || |||| || ||||| ||||||| || || || ||||||
Sbjct 58827 CCTTTACTGACGGGAGAACCCTCATACGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCA 58886
Query 53426 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 53485
|| || || || || ||||| ||||||||||| || || |||| || || | ||
Sbjct 58887 CAGCTGGCTTCCAAAGCACCATAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGG 58946
Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 53545
|| || | || ||||| || || | | | ||| || || ||||| | || || |||
Sbjct 58947 GCCTCAGGACTTTCAAAAGGGTACCTCATCAAAATGAAAGCATCTGCCAGGCCCTGCACA 59006
Query 53546 CCAATACCGATAGGTCTATG 53565
||||| || || || | |||
Sbjct 59007 CCAATGCCAATGGGACGATG 59026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593678087628240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |