Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05]
5,863 sequences; 1,174,811,715 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq470 457 6e-124
seq576 95.1 8e-15
>seq470
Length=2661214
Score = 457 bits (506), Expect = 6e-124
Identities = 777/1113 (70%), Gaps = 26/1113 (2%)
Strand=Plus/Plus
Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582
|||||||| || |||||| || |||||| || |||| | |||||| || |
Sbjct 390323 ATCAACTGCTCGGGGATCGTCCGCGGGGACGAGAAAGCCATCCGGGAGGCCCAGCTCAGC 390382
Query 107583 AACCTGGAAGTGAAGAA-AAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641
|||||||| ||| ||| ||| ||| ||| || || || | | ||||| ||||| |
Sbjct 390383 AACCTGGAGGTGGCGAACAAAAGGGTTGCC-CTGACGCCCAGCGAGTACCTGAACATGGC 390441
Query 107642 CAGAGACTGTGAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGTAA 107698
|| ||||| | ||||||||| ||| || ||||| ||||||| ||||| |
Sbjct 390442 GAGGGACTGCGGCAGCTTCAAGGAGACCC---GGCGATTCATTGAGTTCCCGCTGAGCCA 390498
Query 107699 AGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTT 107758
|| ||| | || |||||||| |||||||| ||||| |||| | || || || | ||
Sbjct 390499 GGAGGAGGTGGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAAATCGAGATGTT 390558
Query 107759 TGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGT 107818
|| ||||| ||||| || | |||||||| |||||||| ||||| |||||| | ||
Sbjct 390559 CGAGCGGCTCCTGCGGTCCCTCTATGCCCCCCAGAACATCTACTGCGTCCACATTGACAG 390618
Query 107819 GAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGT 107878
||||| || | |||||||| ||||| || ||||||| | ||||||||||||||||
Sbjct 390619 CAAGTCTCCGGCCACTTTCAAGGAGGCTGTACAGGCCATCGTGGCCTGCTTCCCCAATGT 390678
Query 107879 CTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGA 107938
||| |||| || | ||| ||||| ||||||||||||||| | ||||||||||
Sbjct 390679 CTTTGTGGCTAGCCACCTGGAAAATGTGGTCTATGCCTCCTGGTCCCGGCTGCAAGCTGA 390738
Query 107939 CCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATAC 107998
||| ||||| ||| | ||| || | | ||| | ||||||||| ||| | || || ||
Sbjct 390739 CCTCAACTGCATGCAGGACCTGTTGCGGAGTCCCGTGCCATGGCGCTACGTCCTCAACAC 390798
Query 107999 ATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTT 108058
||||| |||||||||||||| |||||||| |||||||| ||| ||||| ||| || |
Sbjct 390799 CTGCGGCACAGACTTCCCCATCAAGACCAACGCCGAGATCATCCGTGCCCTGAAGGTGCT 390858
Query 108059 GAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAA 108118
| |||| |||||| |||||||| ||| || || ||| | |||||| |
Sbjct 390859 GCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCACCCCTCAAGCGGCAGCGCTGGCA 390918
Query 108119 ATACCGCTATGAGGTGACAGACACACTGTACCCTAC---CAGCAAGA-TGAAGGACCCTC 108174
|||| | | || ||| |||| | || | || | || ||| ||| || |
Sbjct 390919 GTACCACCACGAAGTG-GGGACA---TTTATCTCACGGACTGCCAGAGAGAAACTGCCGC 390974
Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234
| || | || | |||||||||||||| ||||| || |||||| | || ||||| |
Sbjct 390975 CGCCGCACAACTACCCCATGTTCACAGGCAATGCATACATTGTGGTTACCCGGGCCTTCG 391034
Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294
| || || |||| || ||||| | | | || | | || |||| ||| |||||||
Sbjct 391035 TGCAGCACATCTTCGAGAACCCCACAGCTCAGCAGTTCCTCGAGTGGGCCAAGGACACCT 391094
Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGGCTC 108352
| ||||| || || || ||||||||||||| | || ||| ||| | |||| ||| |
Sbjct 391095 ACAGCCCTGATGAGCATGTCTGGGCCACCCTCAACCGCATGC-CCG-GCGTGCCCGGCGC 391152
Query 108353 TGTTCCTAGCCA---CCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGT 108409
| || ||| | |||||| || |||| ||||||| |||| | || | || ||
Sbjct 391153 CATGCC---CCAGAGCGACAAGTACCAGCTCTCGGACATGAATGCCCTGCCCCGCCTGGT 391209
Query 108410 CAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGG 108469
|||||||||||||| ||||| || ||||| ||| || || || | |||||| | ||
Sbjct 391210 CAAGTGGCAGTACCTAGAGGGTGACACCAGCAAGGGTGCACCCTACCCGCCCTGCACCGG 391269
Query 108470 AATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAA 108529
|| | | | ||| |||| | ||||||| || ||| ||| |||| | || ||| |
Sbjct 391270 CCAGCACCAGCGCGCCGTCTGTGTCTACGGGGTGGGCGACGTGTCCTGGGTGCTACAGCA 391329
Query 108530 CCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTT 108589
|| ||||||||||| |||||||| ||||| | |||||| ||| || | | ||| |
Sbjct 391330 GCACCACCTCTTGGCCAACAAGTTCGACCCCATGGTGGACGATGCCGCCATCATGTGTCT 391389
Query 108590 AGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622
|| ||| |||| || || | |||| |||| ||
Sbjct 391390 CGAGGAGCACCTGCGCCACAGGGCCCTCTACGG 391422
>seq576
Length=3428205
Score = 95.1 bits (104), Expect = 8e-15
Identities = 229/343 (67%), Gaps = 4/343 (1%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || || || ||||| ||| || || ||||| ||||| || ||||| || | ||
Sbjct 1683832 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 1683773
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||| | |||| | || || || | | |||||||||||||| | ||||| |
Sbjct 1683772 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 1683713
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| || || ||||| |||||| |||| | || || |||| ||| | || ||
Sbjct 1683712 CATGTTGACAAAAAGTCTCCAGAGTCTTTTTTTGCTGCTGTGAAGGGCATAGTCTCATGT 1683653
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| |||||||| || |||| |||| | || || ||||| || ||| |||
Sbjct 1683652 TTTGAGAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTGTATGCTTCATGGAGCAGG 1683593
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
||||| || ||| | ||||| ||| |||| | || ||| | ||| | | ||||| |
Sbjct 1683592 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAG-GAAAAGTTCAAACTGGAAAT 1683535
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028
|| || | || || || | ||||| || |||||||||||
Sbjct 1683534 ACCTAATAAACCTTTGTGGTATGGACTTTCCTATAAAGACCAA 1683492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348243914344062
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |