Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq780 116 3e-21 seq515 93.3 3e-14 >seq780 Length=11850152 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| ||| | || ||||| || || || || || Sbjct 4731220 TCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 4731279 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| |||||| |||||||| || | || ||||||||| || || ||| || | Sbjct 4731280 ATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 4731339 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| ||||| ||||||||| Sbjct 4731340 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 4731399 Query 45326 AAGATTTGCATGTTGCCTC 45344 ||||| ||||||| |||| Sbjct 4731400 AAGATCTGCATGTCACCTC 4731418 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| ||| | || ||||| || || || ||||| Sbjct 4730764 TCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 4730823 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| |||||| ||||| || || | || ||||||||| || || ||| || | Sbjct 4730824 ATCAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 4730883 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| ||||| ||||||||| Sbjct 4730884 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 4730943 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 4730944 AAGATCTGCATG 4730955 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| ||| | || ||||| || || || || || Sbjct 4731448 TCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 4731507 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| |||||| |||||||| || | || ||||||||| || || ||| || | Sbjct 4731508 ATCAGCCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 4731567 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| |||| ||||||||| Sbjct 4731568 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACA 4731627 Query 45326 AAGATTTGCATGTTG 45340 ||||| ||||||||| Sbjct 4731628 AAGATCTGCATGTTG 4731642 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | || | || || ||| || ||||| ||||||||||| Sbjct 4730955 GCCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGA 4731014 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || |||| |||||| |||||||| || Sbjct 4731015 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGGGG 4731074 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | |||| | ||| || Sbjct 4731075 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCGAC 4731134 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| |||| |||||||||||||| |||||| Sbjct 4731135 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 4731183 >seq515 Length=1665176 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| |||||||| ||||||||||| || ||| | || ||||| || Sbjct 31747 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 31688 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | | || || ||||| || | || ||||||||| || || Sbjct 31687 TTGCCAGCAAAGATGAGTCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 31628 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||| Sbjct 31627 GCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 31568 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||| Sbjct 31567 AGGGTCTTCACAAAGATCTGCATG 31544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| |||||||| ||||||||||| || ||| | || ||||| || Sbjct 30379 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 30320 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | | || || || | || | || ||||||||| || || Sbjct 30319 TTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTG 30260 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||| Sbjct 30259 GCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 30200 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||| Sbjct 30199 AGGGTCTTCACAAAGATCTGCATG 30176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| |||||||| ||||||||||| || ||| | || ||||| || Sbjct 30607 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 30548 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | | || || || | || | || ||||||||| || || Sbjct 30547 TTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTG 30488 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||| Sbjct 30487 GCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 30428 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||| Sbjct 30427 AGGGTCTTCACAAAGATCTGCATG 30404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| |||||||| ||||||||||| || ||| | || ||||| || Sbjct 30835 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 30776 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | | || || || | || | || ||||||||| || || Sbjct 30775 TTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTG 30716 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||| Sbjct 30715 GCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 30656 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||| Sbjct 30655 AGGGTCTTCACAAAGATCTGCATG 30632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| |||||||| ||||||||||| || ||| | || ||||| || Sbjct 31063 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 31004 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | | || || || | || | || ||||||||| || || Sbjct 31003 TTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTG 30944 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||| Sbjct 30943 GCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 30884 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||| Sbjct 30883 AGGGTCTTCACAAAGATCTGCATG 30860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| |||||||| ||||||||||| || ||| | || ||||| || Sbjct 31291 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 31232 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | | || || || | || | || ||||||||| || || Sbjct 31231 TTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTG 31172 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||| Sbjct 31171 GCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 31112 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||| Sbjct 31111 AGGGTCTTCACAAAGATCTGCATG 31088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| |||||||| ||||||||||| || ||| | || ||||| || Sbjct 31519 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGTCCATCTTCCAGCTGC 31460 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | | || || || | || | || ||||||||| || || Sbjct 31459 TTGCCAGCAAAGATGAGTCTTTGCTGATCAGAGGGAATGCCTTCCTTGTCCTGGATCTTG 31400 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| ||| Sbjct 31399 GCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 31340 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || |||||||||||||| |||||| Sbjct 31339 AGGGTCTTCACAAAGATCTGCATG 31316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395046969778123