Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq431 116 3e-21 seq780 102 7e-17 seq515 95.1 1e-14 seq12 86.0 6e-12 >seq431 Length=331394 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| ||||| |||||||| || || || || Sbjct 62393 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 62452 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| ||||| ||||| || || |||||||||||||| || ||| Sbjct 62453 CCCAAGTTCTGCTGATTGCTCTTTCGGTTGCAAGAGTCTTTGTAGAGCATGTATGGTGTG 62512 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || ||||| ||| || || ||||| || ||||| Sbjct 62513 CCAGTCTCCGTCTGTGATTCAATGATAGCGTACCACA 62549 >seq780 Length=11850152 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 4731412 ACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCA 4731353 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || || | || ||||||||||||| | || ||||||| Sbjct 4731352 GTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACC 4731293 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || || |||||||| ||| ||||||| || || || || | Sbjct 4731292 AGCAGCGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCAGACTACA 4731233 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | |||||||| || Sbjct 4731232 ACATCCAGAAGGAATCCACCCTCCATCTTGTGCTCCGCCTGAGGGGTGG 4731184 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 4730955 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 4730896 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || || ||||| Sbjct 4730895 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 4730836 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||||||||| ||| ||||||| || || || || || Sbjct 4730835 GCAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCAGACTACAA 4730776 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || ||||| || || | |||||||| || Sbjct 4730775 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTCCGCCTGAGGGGTGG 4730728 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||| ||||| || |||||| | || || || || Sbjct 4731183 CATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 4731124 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || |||||||| Sbjct 4731123 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 4731064 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| ||| ||||||| || || || || || Sbjct 4731063 GCAGCGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCAGACTACAA 4731004 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || ||||| || || | ||||| || || Sbjct 4731003 CATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 4730956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| |||| ||||| || |||||| | || || || || Sbjct 4731641 AACATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 4731582 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || ||||||||||||| | || |||||| Sbjct 4731581 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAC 4731522 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||| ||| ||||||| || || || || Sbjct 4731521 CAGCAGCGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCAGACTAC 4731462 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGG 31416 ||||| || || ||||| || || ||||| || || | ||||| || Sbjct 4731461 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGG 4731415 >seq515 Length=1665176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 31544 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 31603 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || ||||| || Sbjct 31604 TGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 31663 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || || |||||||| ||| ||||||| | | | || | || || | Sbjct 31664 GCAAAGACTCATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTCTCTGACTACA 31722 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || ||||| || || ||||| || || | |||||||| |||| Sbjct 31723 ACATCCAGAAGGAATCCACCCTGCATCTAGTGCTGCGCCTGAGGGGTGGTA 31773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 30176 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 30235 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || | || || Sbjct 30236 TGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCTCTGATCA 30295 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || || |||||||| ||| ||||||| | | | || | || || | Sbjct 30296 GCAAAGACTCATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTCTCTGACTACA 30354 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | |||||||| || Sbjct 30355 ACATCCAGAAGGAATCCACCCTGCATCTAGTGCTGCGCCTGAGGGGTGG 30403 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 30404 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 30463 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || | || || Sbjct 30464 TGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCTCTGATCA 30523 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || || |||||||| ||| ||||||| | | | || | || || | Sbjct 30524 GCAAAGACTCATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTCTCTGACTACA 30582 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | |||||||| || Sbjct 30583 ACATCCAGAAGGAATCCACCCTGCATCTAGTGCTGCGCCTGAGGGGTGG 30631 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 30632 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 30691 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || | || || Sbjct 30692 TGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCTCTGATCA 30751 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || || |||||||| ||| ||||||| | | | || | || || | Sbjct 30752 GCAAAGACTCATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTCTCTGACTACA 30810 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | |||||||| || Sbjct 30811 ACATCCAGAAGGAATCCACCCTGCATCTAGTGCTGCGCCTGAGGGGTGG 30859 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 30860 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 30919 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || | || || Sbjct 30920 TGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCTCTGATCA 30979 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || || |||||||| ||| ||||||| | | | || | || || | Sbjct 30980 GCAAAGACTCATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTCTCTGACTACA 31038 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | |||||||| || Sbjct 31039 ACATCCAGAAGGAATCCACCCTGCATCTAGTGCTGCGCCTGAGGGGTGG 31087 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 31088 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 31147 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || | || || Sbjct 31148 TGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCTCTGATCA 31207 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || || |||||||| ||| ||||||| | | | || | || || | Sbjct 31208 GCAAAGACTCATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTCTCTGACTACA 31266 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | |||||||| || Sbjct 31267 ACATCCAGAAGGAATCCACCCTGCATCTAGTGCTGCGCCTGAGGGGTGG 31315 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 31316 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 31375 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || | || || Sbjct 31376 TGACACCATTGAGAACGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCTCTGATCA 31435 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | || || || |||||||| ||| ||||||| | | | || | || || | Sbjct 31436 GCAAAGACTCATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTCTCTGACTACA 31494 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | |||||||| || Sbjct 31495 ACATCCAGAAGGAATCCACCCTGCATCTAGTGCTGCGCCTGAGGGGTGG 31543 >seq12 Length=3827242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || || ||||| || ||||||||||| |||||| || ||||||||| || Sbjct 3384419 GCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGGCTG 3384478 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 |||||| | ||||||||||| || ||||| || Sbjct 3384479 AAGAAAAGGGGCCTGATGCCTGGACTGACTTT 3384510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445733730894960