Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05]
5,863 sequences; 1,174,811,715 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq41 131 2e-25
seq123 114 2e-20
seq12 114 2e-20
seq431 96.9 5e-15
>seq41
Length=3078482
Score = 131 bits (144), Expect = 2e-25
Identities = 146/195 (75%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286
|||||| |||||| || | |||| | | | ||| || ||||||||||||||||||||
Sbjct 292382 TTATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATATC 292441
Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346
|||||||| |||||| | || | | ||| |||||||| || | ||| || || || |
Sbjct 292442 CAAGTAGAGATTGATTGCAGCCAGTATATACTCTTCAGGGGATAACTTGTGCATCAGCAA 292501
Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406
|| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | ||||
Sbjct 292502 ATGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAA 292561
Query 9407 CTCCACTGTTTCACT 9421
||| | ||| |||||
Sbjct 292562 CTCTATTGTCTCACT 292576
Score = 107 bits (118), Expect = 3e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515
|||||| ||| |||||| | || ||||||| ||| ||||| ||| ||||||| ||
Sbjct 293649 AAAATCATCAATATAACAACATACCCCGCTCCAAATTTGCTGAAGTCTTTCTTTGACTGC 293708
Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACG 9575
| |||||||||||||| ||||||| || |||||||| || | || ||||||| ||
Sbjct 293709 AAGGTATATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAACAAAGGCTTGCAAGACA 293768
Query 9576 ACATGCACATCATAGAAAGTAACAACA 9602
||| ||| ||||||||| | || |||
Sbjct 293769 ACAGACACCTCATAGAAACTCACTACA 293795
>seq123
Length=3649919
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| |||| ||| || ||||| |||||||| ||||||| || | || |
Sbjct 2429725 CCTCATCTCTACTGATTAGTTCATTTGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2429666
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 2429665 TCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2429606
Query 36300 C 36300
|
Sbjct 2429605 C 2429605
>seq12
Length=3827242
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | || |
Sbjct 3384539 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTTTTCT 3384480
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 3384479 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3384420
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 3384419 CAACCACTCTCTCACC 3384404
>seq431
Length=331394
Score = 96.9 bits (106), Expect = 5e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119
||||| ||||| ||||||||||||||||| || || | ||| | ||||||| || ||
Sbjct 63774 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGC 63833
Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178
|| || || || || ||||| |||||| || || ||| | | ||||| ||||||| ||
Sbjct 63834 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATATCCAAATGCCATGG 63892
Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205
|||| ||| ||||| | | | |||||
Sbjct 63893 CTCCAGGTAGATGGCAAAAGCCCCAGG 63919
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| |||| ||| || ||||||||||| | ||| || || || || || || || | |
Sbjct 69830 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACCGCAATCCTTGCTGCCAGGA 69889
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| ||||| ||||| |||| || || | || || || |||| || ||||| || ||||
Sbjct 69890 TAGCATAGTCCGGGTGTTTGGTGGTCAAGGTTGCGGCCGTTTCAGCAGCCAGTGTATCCA 69949
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| |||||||| || ||| | || | || || || ||||||||
Sbjct 69950 GTTCCACCGTTGTGACACCACTGTACAGCCCCTGAATCACCTTCAT 69995
Score = 86.0 bits (94), Expect = 8e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 65397 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 65456
|| |||||| || || || |||| || ||||| ||||||| || || || ||||||
Sbjct 58827 CCTTTACTGACGGGAGAACCCTCATACGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCA 58886
Query 65457 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 65516
|| || || || || ||||| ||||||||||| || || |||| || || | ||
Sbjct 58887 CAGCTGGCTTCCAAAGCACCATAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGG 58946
Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576
|| || | || ||||| || || | | | ||| || || ||||| | || || |||
Sbjct 58947 GCCTCAGGACTTTCAAAAGGGTACCTCATCAAAATGAAAGCATCTGCCAGGCCCTGCACA 59006
Query 65577 CCAATACCGATAGGTCTATG 65596
||||| || || || | |||
Sbjct 59007 CCAATGCCAATGGGACGATG 59026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658124564160920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |