Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq41 131 2e-25 seq123 114 2e-20 seq12 114 2e-20 seq431 96.9 5e-15 >seq41 Length=3078482 Score = 131 bits (144), Expect = 2e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| |||||| || | |||| | | | ||| || |||||||||||||||||||| Sbjct 292382 TTATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATATC 292441 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||||| | || | | ||| |||||||| || | ||| || || || | Sbjct 292442 CAAGTAGAGATTGATTGCAGCCAGTATATACTCTTCAGGGGATAACTTGTGCATCAGCAA 292501 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| Sbjct 292502 ATGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAA 292561 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 292562 CTCTATTGTCTCACT 292576 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515 |||||| ||| |||||| | || ||||||| ||| ||||| ||| ||||||| || Sbjct 293649 AAAATCATCAATATAACAACATACCCCGCTCCAAATTTGCTGAAGTCTTTCTTTGACTGC 293708 Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACG 9575 | |||||||||||||| ||||||| || |||||||| || | || ||||||| || Sbjct 293709 AAGGTATATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAACAAAGGCTTGCAAGACA 293768 Query 9576 ACATGCACATCATAGAAAGTAACAACA 9602 ||| ||| ||||||||| | || ||| Sbjct 293769 ACAGACACCTCATAGAAACTCACTACA 293795 >seq123 Length=3649919 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| |||| ||| || ||||| |||||||| ||||||| || | || | Sbjct 2429725 CCTCATCTCTACTGATTAGTTCATTTGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2429666 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2429665 TCAGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2429606 Query 36300 C 36300 | Sbjct 2429605 C 2429605 >seq12 Length=3827242 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | || | Sbjct 3384539 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTTTTCT 3384480 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 3384479 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3384420 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 3384419 CAACCACTCTCTCACC 3384404 >seq431 Length=331394 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | ||| | ||||||| || || Sbjct 63774 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGC 63833 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| |||||| || || ||| | | ||||| ||||||| || Sbjct 63834 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATATCCAAATGCCATGG 63892 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 63893 CTCCAGGTAGATGGCAAAAGCCCCAGG 63919 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | ||| || || || || || || || | | Sbjct 69830 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACCGCAATCCTTGCTGCCAGGA 69889 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| ||||| |||| || || | || || || |||| || ||||| || |||| Sbjct 69890 TAGCATAGTCCGGGTGTTTGGTGGTCAAGGTTGCGGCCGTTTCAGCAGCCAGTGTATCCA 69949 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| |||||||| || ||| | || | || || || |||||||| Sbjct 69950 GTTCCACCGTTGTGACACCACTGTACAGCCCCTGAATCACCTTCAT 69995 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 65397 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 65456 || |||||| || || || |||| || ||||| ||||||| || || || |||||| Sbjct 58827 CCTTTACTGACGGGAGAACCCTCATACGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCA 58886 Query 65457 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 65516 || || || || || ||||| ||||||||||| || || |||| || || | || Sbjct 58887 CAGCTGGCTTCCAAAGCACCATAATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGG 58946 Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576 || || | || ||||| || || | | | ||| || || ||||| | || || ||| Sbjct 58947 GCCTCAGGACTTTCAAAAGGGTACCTCATCAAAATGAAAGCATCTGCCAGGCCCTGCACA 59006 Query 65577 CCAATACCGATAGGTCTATG 65596 ||||| || || || | ||| Sbjct 59007 CCAATGCCAATGGGACGATG 59026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658124564160920