Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq123 111 1e-19 seq12 111 1e-19 >seq123 Length=3649919 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| ||||| || |||||||| || || || ||||| | |||| ||| || Sbjct 2429723 TCATCTCTACTGATTAGTTCATTTGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 2429664 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| ||||| ||||| || |||||||| ||||||||||| ||| Sbjct 2429663 AGCCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 2429604 Query 13295 A 13295 | Sbjct 2429603 A 2429603 >seq12 Length=3827242 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | ||| || Sbjct 3384537 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTTTTCTTC 3384478 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 3384477 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 3384418 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 3384417 ACCACTCTCTCACC 3384404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430951604017926